Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00772
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 163 5e-41
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 163 7e-41
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 162 1e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 162 1e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 162 1e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 162 1e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.8
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 29 2.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.7
At3g01450.1 68416.m00069 expressed protein 28 5.0
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 8.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 8.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 8.7
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 8.7
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 163 bits (397), Expect = 5e-41
Identities = 72/86 (83%), Positives = 82/86 (95%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+P+RRGYWGNKIGKP
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKP 162
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/37 (67%), Positives = 34/37 (91%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQ 77
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMV 181
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 163 bits (396), Expect = 7e-41
Identities = 73/86 (84%), Positives = 81/86 (94%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+PVRRGYWGNKIGKP
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKP 171
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++WVPVTKLGRLV G I ++E IYL SLP+KE++
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQ 86
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMV 190
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 162 bits (394), Expect = 1e-40
Identities = 73/86 (84%), Positives = 81/86 (94%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+PVRRGYWGNKIGKP
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKP 170
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMV 189
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 162 bits (394), Expect = 1e-40
Identities = 73/86 (84%), Positives = 81/86 (94%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+PVRRGYWGNKIGKP
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKP 170
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMV 189
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 162 bits (394), Expect = 1e-40
Identities = 73/86 (84%), Positives = 81/86 (94%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+PVRRGYWGNKIGKP
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKP 170
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMV 189
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 162 bits (394), Expect = 1e-40
Identities = 73/86 (84%), Positives = 81/86 (94%)
Frame = +2
Query: 251 RVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 430
++ID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 431 RGAIILAKLSVLPVRRGYWGNKIGKP 508
RGAIILAKLSV+PVRRGYWGNKIGKP
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKP 170
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ 85
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMV 189
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 287 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 466
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 467 PV 472
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 495 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 316
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 315 CTGMIFRTSSFR 280
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -1
Query: 264 KSMTRIL*LVKKTSKCSRVCRFFLRVQDGRV-W*QEPTLSGLPCRAHDHGRDHDRVHEDR 88
K++TR++ V+ T S + V DG+ ++ + L C AH G D E
Sbjct: 1064 KTLTRVIPCVQVTGHISALVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIESI 1123
Query: 87 RGLYLHRVIRXRRENRHVH-RLEQRPPLL 4
L L +R +E +H R +R PL+
Sbjct: 1124 HKLLLKHRLR-HKEFEEIHARWRRREPLI 1151
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 353 AFVAIGDNNGHIGLGVKCSKE 415
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 498 ILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVC 319
+LL Q L++ + A + VA + H +P + P L P N R+R A C
Sbjct: 165 LLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKASTC 223
Query: 318 F 316
F
Sbjct: 224 F 224
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 117 RDHDRVHEDRRGLYLHRVIRXRRENRHVHRLEQRPP 10
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 117 RDHDRVHEDRRGLYLHRVIRXRRENRHVHRLEQRPP 10
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 117 RDHDRVHEDRRGLYLHRVIRXRRENRHVHRLEQRPP 10
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 502 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 401
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,675
Number of Sequences: 28952
Number of extensions: 247225
Number of successful extensions: 655
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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