Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00771
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   125   9e-30
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    29   0.79 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   4.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   5.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   7.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  125 bits (301), Expect = 9e-30
 Identities = 59/84 (70%), Positives = 70/84 (83%)
 Frame = +2

Query: 257 TDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 436
           +DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FMEA  +
Sbjct: 52  SDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAAS 111

Query: 437 GADISMIGQFGVGFYSSYLVADRV 508
           GADISMIGQFGVGFYS+YLVAD+V
Sbjct: 112 GADISMIGQFGVGFYSAYLVADKV 135



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 40/49 (81%), Positives = 45/49 (91%)
 Frame = +3

Query: 108 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYES 254
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+S
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQS 50



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +1

Query: 511 VHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMXXXXXXXXXX 687
           V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  +++          
Sbjct: 137 VVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEKTIKDTVK 196

Query: 688 XXSQFIGY 711
             S+FI Y
Sbjct: 197 KHSEFISY 204


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +3

Query: 180 SNKEIFLRELISNSSDALDKIRYESSRIRQNSI-VAKSCTSRSFPTRTRALLRSSI---- 344
           S+   +L +L+++  D L K+R E  RIR+  I V  S       T TRA+++  +    
Sbjct: 325 SSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRP 384

Query: 345 PVLV*P 362
           PVL+ P
Sbjct: 385 PVLMVP 390


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 417 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 259
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +3

Query: 81  MPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESSR 260
           + E++  + A+ E+F      A+L    +N    NKE  + +L +  S+   +++   S+
Sbjct: 762 LTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQ 821

Query: 261 IRQN 272
           + Q+
Sbjct: 822 LNQD 825


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 238 KSGMNLHGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 384
           +S    H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 187 RSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 394 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 287
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 494 VADRVLFTLNTMTTSNTCGN-LLQEARSQSAQTAVSPLVEVQRSSFTSKRTWQNSWKNTK 670
           +A+ V     ++TT N   +   + +R +      +PL  V  S+++     Q    N  
Sbjct: 9   MANSVTSFFQSLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNASQTGLLNDS 68

Query: 671 SKRS*RNIPSSLATNQ 718
              S  N+P+S  T+Q
Sbjct: 69  RANSVTNLPNSSNTSQ 84


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 298 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 384
           +DH++++  H+     +Y YD  R  E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 260  DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 388
            DPSK     ++Y K+   + +  L   D+GI ++   L+  +G
Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,685
Number of Sequences: 5004
Number of extensions: 71020
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)