Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00771
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       99   5e-21
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    80   2e-15
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       68   8e-12
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   3.4  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   4.5  
SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)        29   6.0  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 98.7 bits (235), Expect = 5e-21
 Identities = 46/81 (56%), Positives = 58/81 (71%)
 Frame = +1

Query: 511 VHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXX 690
           V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED  E++           
Sbjct: 86  VTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKRIKEIVKK 145

Query: 691 XSQFIGYQSS*WLKRTRKRTV 753
            SQFIGY  S  +++ R + V
Sbjct: 146 HSQFIGYPLSLLVQKERDKEV 166



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/29 (79%), Positives = 28/29 (96%)
 Frame = +2

Query: 431 QAGADISMIGQFGVGFYSSYLVADRVLFT 517
           +AGADISMIGQFGVGFYS+YLVA++V+ T
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKVVVT 87


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
 Frame = +2

Query: 260 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAG 439
           D S+ ++  E+ I+   ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME L+  
Sbjct: 110 DVSETETSLEIMIET--DQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLKNE 167

Query: 440 ADIS---MIGQFGVGFYSSYLVADRV 508
           A  S   +IGQFGVGFYS+++VAD+V
Sbjct: 168 ARSSHENIIGQFGVGFYSTFMVADKV 193



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 529 DDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXXSQFIG 708
           + + Y W S   GS+     +G  + RGTK+VLH+KED   F             S F+G
Sbjct: 203 NSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVG 260

Query: 709 Y 711
           +
Sbjct: 261 F 261



 Score = 35.9 bits (79), Expect = 0.039
 Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = +3

Query: 69  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 245
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 246 Y 248
           +
Sbjct: 103 H 103


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 34/55 (61%), Positives = 41/55 (74%)
 Frame = +3

Query: 90  EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYES 254
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR  S
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMS 122



 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
 Frame = +2

Query: 257 TDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA--FMEAL 430
           TD +  DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A   +   
Sbjct: 124 TDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIADRVIVTS 183

Query: 431 QAGADISMIGQFGVGFYSSYLVADRVLFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVE 610
           +   D   I +     +S  +  D    TL   TT +   +L +EAR       +  LV+
Sbjct: 184 KNNDDKQYIWESDASSFS--ISEDPRGPTLKRGTTISL--HLKEEARDYLEPETIKDLVK 239

Query: 611 VQRSSFTSKRTWQNSWKNTKSKRS*RNIPSSLATNQADG*KEREKELSD 757
            + S F +   +  + K T+ +    + P       A+  K+ EK+  D
Sbjct: 240 -KYSQFINFPIFLWTSKTTEVEEPIDDAPEEKKEEAAEDKKDEEKKDED 287


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 36  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 215
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 216 NSSDALDKI 242
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +2

Query: 266 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 436
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +1

Query: 289 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 456
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 457 WTVRCWLLLQ 486
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
          Length = 261

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 18  KHVC*KPSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIF 197
           +HV     S  V + +   + +  E  T  AEVET +FQ     ++ LI     S+  I+
Sbjct: 51  QHVVQDKPSEDVDMPEICRRVLVAENYTSVAEVETSSFQMNKGHVLVLIQCLMSSSANIY 110

Query: 198 LRELISNSSDALDKIRYESSRI 263
             ++    S   D I  ++S++
Sbjct: 111 NEKIFKEGSGMDDSIYLQNSKL 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,405,719
Number of Sequences: 59808
Number of extensions: 555583
Number of successful extensions: 1493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)