Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00770
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   3.6  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    26   6.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   6.3  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    26   6.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.4  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  LFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLV 144
           ++I G G ++  +   Y  GY++   I+ GIGG ++
Sbjct: 442 VYILGQGLMIRYRGEQYNWGYQIMPQIIVGIGGGVI 477


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 231 ALEDFVLWTTAAKVARML 284
           +LEDFV WT  +K+ R +
Sbjct: 153 SLEDFVTWTDTSKIKRTI 170


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 361 WMVTVPWYTKSATTMKIICPKTARISSMRATFAAVVQRTKS 239
           W     WY +S  +    C K A  SS+  +  +++ RTK+
Sbjct: 784 WSTLTRWYEESENSSFWKCDKDASYSSLDVSNDSLLGRTKN 824


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 181 QTAIPGILPENTKIIEWPWKTLFFGRPRRRW 273
           Q +I  I  E  +  +  WKTLF  +PR R+
Sbjct: 171 QQSIKSIEEELVEKYQQSWKTLFLKKPRSRF 201


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 49   GIGGIVLDQAVDYFRGYE-VFQPIVNGIGGNLVCVQSSRLATHLH-QTAIPGILPENTKI 222
            G+ G  L  A+   +G   + Q  V+    N V V+  R+  +++ ++  P I+PEN   
Sbjct: 1161 GLVGFSLSYAIQITQGLSFIVQQSVDA-ENNTVSVE--RILEYINVKSEAPEIIPENRPP 1217

Query: 223  IEWP 234
             EWP
Sbjct: 1218 CEWP 1221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,954
Number of Sequences: 5004
Number of extensions: 46543
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)