Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00770
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0506 - 18188785-18190599 31 1.2
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 31 1.2
08_01_0354 - 3113931-3113933,3114229-3114244,3114343-3114542,311... 30 2.2
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 29 3.8
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 29 3.8
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 29 5.0
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 28 6.6
12_01_0545 - 4302369-4302926 28 8.7
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597... 28 8.7
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 28 8.7
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 28 8.7
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 8.7
01_06_0771 - 31852796-31853092,31853407-31853793,31854001-318549... 28 8.7
>09_04_0506 - 18188785-18190599
Length = 604
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = -3
Query: 449 HEVDHDVGQVKEQHHLQQGARE-----VRDAERELDGDRPLVHEVRDHHEDYLPEDGQDQ 285
H + D G+ +E+ + RE R+ ER+ D +R + RD H DY ++
Sbjct: 513 HRDERDAGRERERERDRDRERERDRDRERERERDRDRERERYRDDRDRHGDYHRHGKRES 572
Query: 284 QHASHLRRGRPKNK 243
RGR +
Sbjct: 573 DRNEDWDRGRSSGR 586
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 37 LFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILPENT 216
+F G GG+V V Y GY P ++ G V +R+ T P + P +
Sbjct: 312 VFADGGGGVVAADTVMYCTGYRYSFPFLDTEGKVAVDDDDNRIGPLFEHTFPPSLAP-SL 370
Query: 217 KIIEWPWKTL--FFGRPRRRWLA 279
+ P K + +F + RW+A
Sbjct: 371 SFVGIPRKVMVPWFFEAQGRWIA 393
>08_01_0354 -
3113931-3113933,3114229-3114244,3114343-3114542,
3114653-3114731,3114844-3115209,3115557-3115773,
3116455-3116593,3116958-3117228,3117986-3118095,
3118967-3119122
Length = 518
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 1 VLTSGWTPVISALFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNL 141
V GWT V+ +L GI + ++ +++ G EV+ + + +G N+
Sbjct: 447 VFPGGWTAVLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNI 493
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = -3
Query: 386 EVRDAERELDGDRPLVHEVRDHHEDY---LPEDGQDQQHASHLRRGRPKN----KVFQGH 228
E +A +E++ L E DHH D + + Q+ A H KN +VF
Sbjct: 166 EAEEARKEIEERERLDQEAADHHRDRGNDFFKQKRYQEAAMHYTEAMKKNPKDPRVFSNR 225
Query: 227 SMILVFSGRIP-GMAVWWRCVA 165
+ ++ G +P G+ +C+A
Sbjct: 226 AQCHIYLGALPEGLEDADKCIA 247
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -3
Query: 455 LPHEVDHDVGQVKEQHHLQQGAREVRDAERELDGDRPLVHEVRDHHEDYLPEDGQDQQHA 276
LP +V D +E ++ AR+ + R++ D E++ H+D P + QH+
Sbjct: 17 LPSQVRTDSSGEEEGSRARENARKANSSRRKIK-DFSADLELKKAHDDLSPGEKSPSQHS 75
Query: 275 SHLRRGRPKNKV 240
R + N++
Sbjct: 76 GKETRRKQNNQL 87
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
G GG V G P L PP+ +H L V EVI+
Sbjct: 660 GRGGTVGRGGGPSHLAILSQPPDTIHGSLRVTVQGEVIE 698
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
G GG V G P L PPN V+ L V EVI+
Sbjct: 767 GRGGTVGRGGGPSHLAILSQPPNTVNGSLRVTVQGEVIE 805
>12_01_0545 - 4302369-4302926
Length = 185
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 455 LPHEV-DHDVGQVKEQHHLQQGAREVRDAERELDGD 351
+P EV D VG+ + HH + E+ + + LDGD
Sbjct: 15 VPPEVEDARVGEDADDHHREDAEEELAERDAALDGD 50
>08_02_0424 -
16957793-16958089,16958215-16958601,16958737-16959735,
16959840-16959994,16960082-16960169,16960241-16960344,
16960424-16960646,16960839-16960923,16961006-16961397,
16962841-16963005
Length = 964
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
G GG V G P L PP+ +H L V EVI+
Sbjct: 633 GRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIE 671
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 622 ELGL*VLDVRPDRESGQAICSLARN 696
EL L ++ ++PD E GQ +C LAR+
Sbjct: 281 ELTLPIVPLKPDLEYGQNLCVLARD 305
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -2
Query: 273 PPSPRSSKEQSLPRPLNDLSVLRQDPGDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVP 94
PPS R+SKE+ RP L+ + P + PP R++ L+P
Sbjct: 263 PPSMRASKERIGLRPAEMLANVGPSPSKAKQIVNPAAAKVTQRVDPPPAKASQRIDPLLP 322
Query: 93 SEVIDGLVQDYT 58
S+V + +T
Sbjct: 323 SKVHIDATRSFT 334
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 446 EVDHDVG---QVKEQHHLQQGAREVRDAERELDGDR 348
E +HDVG + KE +H + +R RD+ER DG R
Sbjct: 17 EREHDVGVSRRSKEHYHHRHPSRH-RDSERRRDGGR 51
>01_06_0771 -
31852796-31853092,31853407-31853793,31854001-31854999,
31855084-31855238,31855694-31855784,31855866-31855969,
31856052-31856274,31856415-31856499,31856741-31857132,
31857963-31858130
Length = 966
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
G GG V G P L PP+ +H L V EVI+
Sbjct: 635 GRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIE 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,145
Number of Sequences: 37544
Number of extensions: 375933
Number of successful extensions: 1369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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