Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00770
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13362| Best HMM Match : Phage_T4_Ndd (HMM E-Value=0.82)             75   4e-14
SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)                  63   2e-10
SB_39011| Best HMM Match : Ponericin (HMM E-Value=1.5)                 35   0.059
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)            28   8.9  
SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)                    28   8.9  

>SB_13362| Best HMM Match : Phage_T4_Ndd (HMM E-Value=0.82)
          Length = 294

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = +1

Query: 55  GGIVLDQAVDYFRGYEVFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILPENTK 219
           GG+VLD AV  + G  VF P++NG+GGNLV VQ+SRL+THLHQ   PG LP+ +K
Sbjct: 3   GGLVLDYAVVSYHGIAVFSPVMNGVGGNLVAVQASRLSTHLHQLGRPGRLPKGSK 57


>SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)
          Length = 411

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/81 (38%), Positives = 42/81 (51%)
 Frame = +3

Query: 264 AKVARMLLILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTCAXXXXXXXXXXAYIVIH 443
           AK  R+L++L V G ++F+     +  G  +    F   YL             A  ++H
Sbjct: 304 AKTVRVLMLLVVPGHLVFLYTIRMMQGGHTSFTAVFTTFYLLVGVLQVSFLLLLANWLVH 363

Query: 444 FMWKRKKDPDNAAIPYLTALG 506
           +MWKR KDPDN  IPYLTALG
Sbjct: 364 WMWKRGKDPDNYTIPYLTALG 384



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1

Query: 124 GIGGNLVCVQSSRLATHLHQTAIPGILPENTK 219
           G+GGNLV VQ+SRL+THLHQ   PG LP+ +K
Sbjct: 258 GVGGNLVAVQASRLSTHLHQLGRPGRLPKGSK 289


>SB_39011| Best HMM Match : Ponericin (HMM E-Value=1.5)
          Length = 124

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 591 FHWTLLPYSSPKRDRMTKASPRNTEP 514
           FHW    Y +P+ DR +K SPR T P
Sbjct: 18  FHWNAEAYDAPRGDRCSKTSPRGTGP 43


>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 139 GSPQCRSRSAGTPRTLGSNRRPGPG 65
           GSP  R  S+G P T+GSN   G G
Sbjct: 129 GSPGSRPNSSGVPMTMGSNSHFGGG 153


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 443 VDHDVGQVKEQHHLQQGAREVRDAERELDGDRPLVHEVRDHHEDYLPE--DGQDQQHASH 270
           V HDV  +KEQ        EVR  + ++D  +P    +    ED+L +   G ++   S 
Sbjct: 381 VSHDVSALKEQQE------EVRAIKTDVDAHKPTYETINKQSEDFLEKTRPGAERDEISR 434

Query: 269 L 267
           L
Sbjct: 435 L 435


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 458  PLPHEVDHDVGQVKEQHHLQQ--GAREVRDAERELDGDRPLVHEVRDHHEDYLPEDGQDQ 285
            P  H+        ++QH  QQ    ++  D +++ D  +   H+ +  H D   +   DQ
Sbjct: 1076 PAQHDQQQQNTGQQQQHDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQQHHDQQQQQHHDQ 1135

Query: 284  QHASH 270
            Q   H
Sbjct: 1136 QQQHH 1140


>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
          Length = 432

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 452 PHEVDHDVGQVKEQHHLQQGAREVRDAERELDGDRPLVHEVRDHHEDYLPEDGQDQQH 279
           P E D +  + +++    +G  E  D  R  +GDR    E  D ++DY  +D +D++H
Sbjct: 94  PRERDSEQDRTRDK---DRGRHEKTDKGRNGEGDREKRKERSDRNQDYERKD-RDRRH 147


>SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)
          Length = 680

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 145 TPGSPQCRSRSAGTPRTLGSNRRPGPG 65
           TPG+  C +  A    TLG+NRR  PG
Sbjct: 12  TPGTNSCFTPGANKRFTLGANRRFTPG 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,831,705
Number of Sequences: 59808
Number of extensions: 393709
Number of successful extensions: 1268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)