Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00770
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.14 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.97 
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 467 VLLPLPHEVDHDVGQVKEQHHLQQGAREVRDAERELDGDRPLVHEVRDHHED 312
           +L   PH+ DH+  + K  HH  Q   ++   E E D  +    EV D  E+
Sbjct: 48  LLTSQPHQ-DHNKEKSKNNHHCNQDTEKLNQLEIESDNSK----EVNDKKEE 94


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 285 LILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTC 392
           ++L   G I+F +++ +V++  +        T+L C
Sbjct: 336 IVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVC 371


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 437 DPLHVEEEEGPRQCRHPLPHGARRLLGSV 523
           +PL  ++E+  + C    P  +  LLG V
Sbjct: 28  EPLDNDKEQSAQVCYRGAPQDSENLLGRV 56


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 437 DPLHVEEEEGPRQCRHPLPHGARRLLGSV 523
           +PL  ++E+  + C    P  +  LLG V
Sbjct: 28  EPLDNDKEQSAQVCYRGAPQDSENLLGRV 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,732
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)