Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00770
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38037.1 68418.m04583 hypothetical protein                          29   4.2  
At3g61690.1 68416.m06913 expressed protein                             29   4.2  
At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putati...    29   4.2  
At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putati...    29   4.2  
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica...    29   4.2  
At5g57870.2 68418.m07239 eukaryotic translation initiation facto...    28   5.5  
At5g57870.1 68418.m07238 eukaryotic translation initiation facto...    28   5.5  
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot...    28   5.5  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    28   7.3  
At3g60850.1 68416.m06807 expressed protein                             28   7.3  
At3g52410.1 68416.m05764 hypothetical protein contains Pfam prof...    28   7.3  
At3g15095.1 68416.m01909 expressed protein                             28   7.3  
At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p...    27   9.6  
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin...    27   9.6  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    27   9.6  

>At5g38037.1 68418.m04583 hypothetical protein
          Length = 226

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 275 SHLRRGRPKNKVFQ---GHSMILVFSGRIPGMAVW 180
           SH+ R   KN  F    G S++ VFSG+I G+  W
Sbjct: 112 SHVFRFWRKNHGFSFLAGKSLVFVFSGKITGLRFW 146


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 181 QTAIPGILPENTKIIEWPWKT 243
           Q  +PGI+P N   IE PW T
Sbjct: 647 QRNMPGIVPSNLPFIEAPWST 667


>At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC2) strong similarity to
           phosphoenolpyruvate carboxylase [Brassica napus]
           GI:507808; contains Pfam profile PF00311:
           phosphoenolpyruvate carboxylase
          Length = 793

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
           G GG V   G P  L     PP+ +H +L   V  EVI+
Sbjct: 633 GRGGTVGRGGGPTHLAILSQPPDTIHGQLRVTVQGEVIE 671


>At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC2) strong similarity to
           phosphoenolpyruvate carboxylase [Brassica napus]
           GI:507808; contains Pfam profile PF00311:
           phosphoenolpyruvate carboxylase
          Length = 793

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 195 GDGGLVEVRGQPGRLHAHQVPPNAVHDRLEHLVPSEVID 79
           G GG V   G P  L     PP+ +H +L   V  EVI+
Sbjct: 633 GRGGTVGRGGGPTHLAILSQPPDTIHGQLRVTVQGEVIE 671


>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
           to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
           (5320), 1865-1868 (1997))
          Length = 933

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 234 RPLNDLSVLRQDPGDGGLVEVRGQPGRLHAHQVPPNAV 121
           RP  D S      G+     V  Q G+ H   VPPNAV
Sbjct: 654 RPAVDSSFQHSGAGNNNTQSVLEQLGQSHTSNVPPNAV 691


>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 776

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 154 TARTPGSPQCRSRSAGTPRTLGSNRRPGPG 65
           T R PG P   + +   PRT   +RR GPG
Sbjct: 505 TRRMPGMPGVDNDNWEVPRTRSMSRRDGPG 534


>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
           4F, putative / eIF-4F, putative similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 780

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 154 TARTPGSPQCRSRSAGTPRTLGSNRRPGPG 65
           T R PG P   + +   PRT   +RR GPG
Sbjct: 509 TRRMPGMPGVDNDNWEVPRTRSMSRRDGPG 538


>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase; also
           similar to l-ascorbate oxidase and pollen-specific
           protein
          Length = 550

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   VLTSGWTPVISALFISGIGGIVLDQAVDYFRGYEVFQPIVN 123
           V    WT V+ +L  +G+  + +D    ++ G E++  +VN
Sbjct: 483 VFPGAWTAVLVSLDNAGMWNLRIDNLASWYLGQELYLSVVN 523


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 197 PGMAVWWRCVASRDDCTHTRFPPMPFTIGWNTSYP 93
           P   + W   A++DD    + PP+ F  G+N  YP
Sbjct: 103 PSKVIDWLLEAAKDDVD--KLPPLQFPHGFNQMYP 135


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 386 EVRDAERELDGDRPLVHEVRDHHEDYLPEDGQDQQ 282
           E   ++  L GD  LVH   DHH ++L  DG+D +
Sbjct: 494 EKSHSDEILVGDNDLVHW-SDHHHEHLYGDGKDAE 527


>At3g52410.1 68416.m05764 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 233 GHSMILVFSGRIPGMAVWW 177
           G S + VF G+I G+  WW
Sbjct: 17  GKSRVYVFGGKITGLRFWW 35


>At3g15095.1 68416.m01909 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 174 VRGQPGRLHAHQVPPNAVHDRLEHLVPSEVI 82
           VR  PGR  A ++PP AV D   H  P + I
Sbjct: 551 VRCLPGRPPAKKIPPEAVGDNHHHHQPKKRI 581


>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
           protein 
          Length = 317

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 494 EVGDGGIVGVLLPLPHEVDHDVGQVKEQHHLQQG 393
           E+G+G I  + LPL  + +     VKE   L QG
Sbjct: 62  EIGNGVINSMFLPLTQQAEIACENVKEMKELSQG 95


>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 395 GAREVRDAERELDGDRPLVHEVRD-HHEDYLPEDGQDQQHASHLRRGRPKNKVFQGHS 225
           G  E  ++E+ LDG   +    RD +   +LPE G+D++H +    G P++K  +G S
Sbjct: 220 GGTERTESEKRLDGKYFVTVRDRDWYWRAFLPE-GEDREHPACSPFG-PRSKSLEGLS 275


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 440 DHDVGQVKEQHHLQQGAREVRDAERELDGDRPLVHEVRDHHEDYLPE--DGQDQQHASHL 267
           + D  + K +   ++ +R+ RD +RE   DR      RD H D   E  + +D     H 
Sbjct: 69  EKDRDREKSRDRDREKSRD-RDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHH 127

Query: 266 RRGRPKNK 243
           RR R +++
Sbjct: 128 RRSRDRDR 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,292
Number of Sequences: 28952
Number of extensions: 270673
Number of successful extensions: 929
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)