Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00769
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   5.9  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 103 NTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDCS 252
           NT   Y      L+ S+      S+ ++ N   PT +  N T YQN+  S
Sbjct: 350 NTTYFYWNSTSSLSSSVFT-NTTSSSNSTNSSIPTTYPSNSTTYQNITTS 398


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 546  NLMQLDLPYQAIQLQQGVDLHF--NMGTGQLHKLINKH 653
            +LMQ+ +P+    LQ+     +    G+G+LH L N+H
Sbjct: 1033 DLMQVKMPFLRRSLQRISQQGYLAGRGSGRLHSLFNEH 1070


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = -1

Query: 516 VGSKELLDLHDLANPIPIDSMNRPRN-SLMSSTL--HLEATVHRCCF---RYFPPPWG-L 358
           V   E + +  + NP+ +D++N P N  L    L  +L+ +V   C    RY P  +G +
Sbjct: 21  VDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHLDERYCPGHFGHI 80

Query: 357 LLPL 346
           +LP+
Sbjct: 81  VLPI 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,423
Number of Sequences: 5004
Number of extensions: 68336
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)