Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00769
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0125 - 1317328-1318049,1318061-1319035,1320994-1321143,132... 38 0.006
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 36 0.040
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 31 1.1
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 30 1.5
10_08_0379 - 17373533-17374147 30 2.0
04_04_0509 - 25763685-25764293 29 3.5
06_01_1160 - 9868340-9868360,9868639-9868986 29 4.6
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 28 6.1
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 28 6.1
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 28 6.1
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 28 6.1
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 28 6.1
05_05_0364 - 24431903-24432463 28 8.0
>04_01_0125 -
1317328-1318049,1318061-1319035,1320994-1321143,
1322242-1322546,1323447-1323565
Length = 756
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 100 FNTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDCSESTGR 267
FN LN ++P+ + N SI+ + S+ D P P W+L + +V+ ++ +GR
Sbjct: 391 FNMLNGEISPELIGNASILTSLLLSHNDLTGPMPPFHWSLGQLTHLSVENNQLSGR 446
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 103 NTLNSYVTPKKLLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDCSESTGRHWLS 279
N LN + P + N SI+ + SN D P P W L + +++ + S+G WLS
Sbjct: 242 NNLNEEILPTLIGNLSILTSLLLSNNDLTGPMPPFHWNLGSLKHLSLENNRSSG--WLS 298
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 482 RSWRSKSSFEPTLPLIDGFPMQPD--ATGPSISGYT 583
RS +S FEP LPLI G + + ATG S+S +T
Sbjct: 77 RSGYGRSIFEPVLPLIIGRDISGEVAATGTSVSSFT 112
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 325 HLHPNSM*RKEKPPWRWKIPKTTPMYSCLQVQSGTHQRIPGAVHG 459
H H ++M +++ P P P++ L ++ T Q IPGA G
Sbjct: 485 HAHSDNMIQEQGTPHGVNNPDAAPVFYSLHQENVTKQHIPGATAG 529
>10_08_0379 - 17373533-17374147
Length = 204
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 263 GGIGSAMDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVA-SRCRVELINE 439
GG G M + S S GA+ ++ + RR + G+Y + HR ++ +RC + E
Sbjct: 18 GGGGGGMATGATSA--SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLE 75
Query: 440 FLGRFMESMG 469
FL R+++ G
Sbjct: 76 FL-RYLDQFG 84
>04_04_0509 - 25763685-25764293
Length = 202
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 263 GGIGSAMDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVA-SRCRVELINE 439
GG G + SN +G + ++ + RR + G+Y + HR ++ ++C + E
Sbjct: 17 GGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLE 76
Query: 440 FLGRFMESMG 469
FL R+++ G
Sbjct: 77 FL-RYLDQFG 85
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 305 CHSGTGATSTQTRCRGRRSPHGG 373
C SG G T RCRG R GG
Sbjct: 31 CSSGAGLTCRDNRCRGGRGGIGG 53
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 TVASRCRVELINEFLGRFMESMGMGLAR-SWRSKSSFEPTLPLID 532
T A + +N FL R S + SW ++ SF P LPL D
Sbjct: 480 TTAHHSKSFAVNSFLSRHDSSSTVDFKLLSWPARRSFHPNLPLED 524
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 486 DLANP-IPIDSMNRPRNSLMSSTLHLEATVHRCCFRYFPPPWGLLLPLHR 340
D+A P P D+++ PR +S + T + P P G P+HR
Sbjct: 300 DIAGPSAPADNLDAPRKGTAASLMDWNPTARTFQWEDSPDPDGSRSPIHR 349
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -1
Query: 420 LHLEATVHRCCFRYFPPPWGLLLPLHRVWVEVAPVPLW 307
L+++ H +++P +G+L +RV++E+ +PL+
Sbjct: 301 LNIQIAFHGTHTKHYPGIFGVLAKYYRVYLEILTIPLF 338
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 251 VSRLGGIGSAMDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRVEL 430
++R G + A + RS A S RR GGG+ + + A+R +EL
Sbjct: 578 LARAGDLDGAAEIVRRSSGGGSPAAWSALLSACRRRGDGGGGEVGR----SAAARV-LEL 632
Query: 431 INEFLGRFMESMGMGLARSW 490
++ SMGMGL + W
Sbjct: 633 EPGKSAGYLMSMGMGLGKGW 652
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 330 EVAPVPLWQQLLSLLSIAEPMPPSRLTAVHILIGRWIQGPLGGISWICRILV 175
EVA P +L+ + EP+ P V +++ +I G + + W+ RI+V
Sbjct: 241 EVAMDPAHDVILAYMQNGEPLTPDHGFPVRVIVPGFIGGRM--VKWLKRIIV 290
>05_05_0364 - 24431903-24432463
Length = 186
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 404 VASRCRVELINEFLGRFMESMGMGLARSWRSKSS 505
V+ CR I + + ESM M L + W S SS
Sbjct: 85 VSRECRCAAIRRMVRSYEESMPMPLEQGWSSSSS 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,318
Number of Sequences: 37544
Number of extensions: 501192
Number of successful extensions: 1465
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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