Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00769
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              31   0.88 
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        29   2.7  
SB_32292| Best HMM Match : MrpF_PhaF (HMM E-Value=3.5)                 29   4.7  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 372 PPWGLLLPLHRVWVEVAPVPLWQQLLSLLSIAEPMPP 262
           PP G+L P   +W  V P PLW  + SLL    P+PP
Sbjct: 675 PPQGMLSPAP-LWY-VVPFPLWYVIPSLLRYVVPLPP 709


>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 332 TQTRCRGRRSPHGGGKYRKQHRCTVASRC 418
           T+ RC G RS HG G + K  RCT  +RC
Sbjct: 2   TKKRCNGGRSKHGRG-HVKFVRCTNCARC 29


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +1

Query: 415  VQSGTHQRIPGAVHGINGDGVGQVMEI---QKFLRT----YFTFDRRVSHAT*CNWTFHI 573
            V   T  R+ G    +    +G V+ +   ++++R       ++ RR SH   C  +F +
Sbjct: 1066 VTGNTDARVVGGASVVQDSQLGNVIAVSGSEQYIRVGDFETVSYSRRCSHVNHCAHSFLM 1125

Query: 574  RLYNCSREWTYIS-TW 618
            R + C + W Y++ TW
Sbjct: 1126 RRFLC-QTWYYVTFTW 1140


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 490 EIQKFLRTYFTFDRRVSHAT*CNWTFHIRLYN-CSREWTYISTWVLD 627
           + QK +   F + R +     C  ++H+   N C  EW   STW L+
Sbjct: 28  QAQKTIFLNFNYKRAMKRKPCCATSYHLYSVNVCLCEWVPYSTWTLE 74


>SB_32292| Best HMM Match : MrpF_PhaF (HMM E-Value=3.5)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -1

Query: 363 GLLLPLHRVWVEVAPVPLWQQLLSLLSIAEPMP-PSRLTAVHILIGRWIQGPLGGISWIC 187
           G++  +H   + V P P+   +  +L +  P+P P  ++ +HIL+   + GP+  I  + 
Sbjct: 214 GVVSTIHIPLIVVVPGPV-STIHIVLIVVIPVPIPGPVSTIHILLIVVVHGPVNTIKILL 272

Query: 186 RILV-GIHFRLNYTMI**FFGCYIAIQCIKIVTI 88
            ++V G+   ++  +I    G    I  + IV I
Sbjct: 273 IVVVSGLVSTIHILLIVVVLGPVSTIHILLIVVI 306


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 263 GGIGSAMDSNERSCCHSGTG-ATSTQTRCRGRRSPHGGGKYR 385
           GG G   DS+        +G   S  T  RGR +P G G YR
Sbjct: 271 GGYGGGYDSSMGQYSQEASGYGPSRGTGGRGRGAPRGSGGYR 312


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 625 PVPMLKCRSTPCCSCIA*YGRSSC--IRLHG-KPVDQ 524
           P   ++      C C+  YG S+C  +RLHG  P D+
Sbjct: 437 PCDRVRSHGNSPCDCVRLYGNSACDRVRLHGNSPCDR 473


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 356 RSPHGGGKYRKQHRCTVASRCRVELINEFLGRFMESMGMGL 478
           R P    KY+K++   +A R    L + FL R  + +GM L
Sbjct: 740 RQPEEVRKYKKRYETALAGRTADALADSFLKRTTKLVGMAL 780


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,033,452
Number of Sequences: 59808
Number of extensions: 547719
Number of successful extensions: 4858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)