Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00769
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10333-1|AAA59950.1| 776|Homo sapiens nueroendocrine-specific p... 31 3.9
BC090862-1|AAH90862.1| 776|Homo sapiens reticulon 1 protein. 31 3.9
BC107700-1|AAI07701.1| 93|Homo sapiens SFRS18 protein protein. 31 5.1
BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein. 31 5.1
BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein. 31 5.1
BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein. 31 5.1
BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein. 31 5.1
BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein. 31 5.1
BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein. 31 5.1
BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein. 31 5.1
AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein. 31 5.1
AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens ... 31 5.1
AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens ... 31 5.1
AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens ... 31 5.1
AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein. 31 5.1
AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein. 31 5.1
AJ224874-1|CAA12175.1| 1966|Homo sapiens L-type calcium channel ... 30 6.8
AJ006216-1|CAA06916.1| 1966|Homo sapiens L-type calcium channel ... 30 6.8
AF201304-1|AAF15290.1| 1977|Homo sapiens voltage-gated L-type ca... 30 6.8
AF067227-1|AAD03587.1| 1912|Homo sapiens voltage-gated L-type ca... 30 6.8
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 30 8.9
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 30 8.9
AM083054-1|CAL07200.1| 103|Homo sapiens immunoglobulin heavy ch... 30 8.9
AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein. 30 8.9
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 30 8.9
>L10333-1|AAA59950.1| 776|Homo sapiens nueroendocrine-specific
protein A protein.
Length = 776
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 209 SGP*IQRPIKMWTAVSRLGGIGSAMDSNERSCCHSGTGATST 334
SGP Q P+ M TA + + G+ SAMD + G G+ T
Sbjct: 65 SGPARQSPVAMETASTGVAGVSSAMDHTFSTTSKDGEGSCYT 106
>BC090862-1|AAH90862.1| 776|Homo sapiens reticulon 1 protein.
Length = 776
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 209 SGP*IQRPIKMWTAVSRLGGIGSAMDSNERSCCHSGTGATST 334
SGP Q P+ M TA + + G+ SAMD + G G+ T
Sbjct: 65 SGPARQSPVAMETASTGVAGVSSAMDHTFSTTSKDGEGSCYT 106
>BC107700-1|AAI07701.1| 93|Homo sapiens SFRS18 protein protein.
Length = 93
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein.
Length = 274
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein.
Length = 256
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein.
Length = 270
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein.
Length = 504
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein.
Length = 257
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ90147 fis, clone HEMBB1001847, weakly similar to
NEUROGENIC PROTEIN BIG BRAIN. ).
Length = 520
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ14992 fis, clone Y79AA1001805. ).
Length = 499
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens
cDNA FLJ14752 fis, clone NT2RP3003071. ).
Length = 413
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein.
Length = 500
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
+DWAALAQ WIA +E
Sbjct: 32 IDWAALAQAWIAQRE 46
>AJ224874-1|CAA12175.1| 1966|Homo sapiens L-type calcium channel
alpha-1 subunit protein.
Length = 1966
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 269 IGSAMDSNE--RSCCHSGTGATST--QTRCRGR-RSPHGG 373
+GS M++ E C SG+G T QT CRGR P+GG
Sbjct: 270 LGSDMEAEEDPSPCASSGSGRACTLNQTECRGRWPGPNGG 309
>AJ006216-1|CAA06916.1| 1966|Homo sapiens L-type calcium channel
alpha-1 subunit protein.
Length = 1966
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 269 IGSAMDSNE--RSCCHSGTGATST--QTRCRGR-RSPHGG 373
+GS M++ E C SG+G T QT CRGR P+GG
Sbjct: 270 LGSDMEAEEDPSPCASSGSGRACTLNQTECRGRWPGPNGG 309
>AF201304-1|AAF15290.1| 1977|Homo sapiens voltage-gated L-type
calcium channel alpha-1 subunit protein.
Length = 1977
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 269 IGSAMDSNE--RSCCHSGTGATST--QTRCRGR-RSPHGG 373
+GS M++ E C SG+G T QT CRGR P+GG
Sbjct: 270 LGSDMEAEEDPSPCASSGSGRACTLNQTECRGRWPGPNGG 309
>AF067227-1|AAD03587.1| 1912|Homo sapiens voltage-gated L-type
calcium channel alpha-1 subunit protein.
Length = 1912
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +2
Query: 269 IGSAMDSNE--RSCCHSGTGATST--QTRCRGR-RSPHGG 373
+GS M++ E C SG+G T QT CRGR P+GG
Sbjct: 205 LGSDMEAEEDPSPCASSGSGRACTLNQTECRGRWPGPNGG 244
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 576 PDMEGPVAS-GCMGNPSIKGKVGSKELLDLHDLANPIPI 463
P ++GP S G G +KG+ G+K LHD+ P P+
Sbjct: 1165 PGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPV 1203
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 576 PDMEGPVAS-GCMGNPSIKGKVGSKELLDLHDLANPIPI 463
P ++GP S G G +KG+ G+K LHD+ P P+
Sbjct: 1165 PGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPV 1203
>AM083054-1|CAL07200.1| 103|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 103
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 285 SIAEPMPPSRLTAVHILIGRWI-QGPLGGISWICRILVG 172
S+ P P S LT+ I++ W+ QGP G+ W+ +L G
Sbjct: 20 SLRMPCPASNLTSRRIVM-TWVRQGPGKGLEWVSGLLPG 57
>AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein.
Length = 339
Score = 29.9 bits (64), Expect = 8.9
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 393 CCFRYFPPP--WGLLLPLHRVWVEVAPVPLWQQLLSLLSIAEPMPPSRLTAVHILIGRWI 220
C + PPP LLLP R WV +P W+ L P+ SR + + +
Sbjct: 10 CSLPHLPPPPACALLLPWPRTWVFPSPASGWRW---LTRSRYPLTWSRTSTRSSMGMSLV 66
Query: 219 QGPLGGI 199
GPL G+
Sbjct: 67 SGPLQGL 73
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 576 PDMEGPVAS-GCMGNPSIKGKVGSKELLDLHDLANPIPI 463
P ++GP S G G +KG+ G+K LHD+ P P+
Sbjct: 1165 PGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPV 1203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,373,700
Number of Sequences: 237096
Number of extensions: 2941670
Number of successful extensions: 6197
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6195
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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