Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00769
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 31 0.78
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 28 5.5
X75331-1|CAA53080.1| 620|Caenorhabditis elegans acetylcholinest... 28 7.2
U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal acetyl... 28 7.2
AC024746-8|AAF60397.1| 104|Caenorhabditis elegans Hypothetical ... 28 7.2
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 27 9.6
U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 27 9.6
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 27 9.6
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 27 9.6
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 255 VDWAALAQQWIAMKE 299
VDWA LAQQW+AM++
Sbjct: 16 VDWAQLAQQWMAMRD 30
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 576 PDMEGPVASGCMGNPSIKG 520
PD E PVAS C NP + G
Sbjct: 337 PDCENPVASACTPNPCVNG 355
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +2
Query: 512 PTLPLID---GFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAP 634
P LP + GFP QP G + G A G F H + AP
Sbjct: 372 PFLPFLGHQFGFPQQPAGAGGAQPGAAQAGGQPGPFPHQIFYAP 415
>X75331-1|CAA53080.1| 620|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 620
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 352 KEKPPWRWKIPKTTPMYSCLQ 414
K K PWR + TTP SC+Q
Sbjct: 64 KPKQPWRIPLNATTPPNSCIQ 84
>U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal
acetylcholinesterase protein1 protein.
Length = 620
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 352 KEKPPWRWKIPKTTPMYSCLQ 414
K K PWR + TTP SC+Q
Sbjct: 64 KPKQPWRIPLNATTPPNSCIQ 84
>AC024746-8|AAF60397.1| 104|Caenorhabditis elegans Hypothetical
protein Y110A2AL.9 protein.
Length = 104
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 269 IGSAMDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRC 418
+G + N CC S A S+ C+ +P G G R + RC
Sbjct: 1 MGDTVMVNGNMCCESKNVAVSSLLSCKSDMTPAGYGLCRPGYTLMYGYRC 50
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 482 RSWRSK--SSFEPTLPLIDGFPMQPDATGPSISGY 580
R W ++ + E L +IDG + +TGPS+S Y
Sbjct: 235 RQWENRLIQAAEKCLSVIDGADSEGTSTGPSVSPY 269
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 482 RSWRSK--SSFEPTLPLIDGFPMQPDATGPSISGY 580
R W ++ + E L +IDG + +TGPS+S Y
Sbjct: 131 RQWENRLIQAAEKCLSVIDGADSEGTSTGPSVSPY 165
>U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor
protein 139 protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 489 HDLANPIPIDSMNRPRNSLMSSTLHLE 409
H +AN IP+ + PRNSLM++ L+
Sbjct: 315 HFVANVIPLQHLPVPRNSLMTAHASLQ 341
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 482 RSWRSK--SSFEPTLPLIDGFPMQPDATGPSISGY 580
R W ++ + E L +IDG + +TGPS+S Y
Sbjct: 181 RQWENRLIQAAEKCLSVIDGADSEGTSTGPSVSPY 215
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 482 RSWRSK--SSFEPTLPLIDGFPMQPDATGPSISGY 580
R W ++ + E L +IDG + +TGPS+S Y
Sbjct: 235 RQWENRLIQAAEKCLSVIDGADSEGTSTGPSVSPY 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,724
Number of Sequences: 27780
Number of extensions: 396478
Number of successful extensions: 1018
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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