Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00769
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.4  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 LLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDC 249
           +LN +++    Y  +    PG+P +   NP    + DC
Sbjct: 89  VLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDC 126


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 LLNHSIIQPKMYSNKDAANPGYPTQWALNPTAYQNVDC 249
           +LN +++    Y  +    PG+P +   NP    + DC
Sbjct: 89  VLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDC 126


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 430 HQRIPGAVHGINGDGVGQVMEIQKFL 507
           +Q  P +    NGDG+G +  I++ L
Sbjct: 33  YQVYPRSFKDSNGDGIGDIEGIKEKL 58


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 430 HQRIPGAVHGINGDGVGQVMEIQKFL 507
           +Q  P +    NGDG+G +  I++ L
Sbjct: 33  YQVYPRSFKDSNGDGIGDIEGIKEKL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,093
Number of Sequences: 438
Number of extensions: 5070
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)