Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00769
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 30 1.7
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 30 1.7
At2g22340.1 68415.m02651 hypothetical protein 29 2.9
At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.8
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 3.8
At5g03700.1 68418.m00330 PAN domain-containing protein contains ... 28 5.1
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 28 5.1
At1g18860.1 68414.m02348 WRKY family transcription factor contai... 28 5.1
At3g58490.1 68416.m06519 phosphatidic acid phosphatase family pr... 28 6.7
At4g18030.1 68417.m02684 dehydration-responsive family protein s... 27 8.9
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 27 8.9
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 27 8.9
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta... 27 8.9
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 27 8.9
At1g52060.1 68414.m05873 jacalin lectin family protein similar t... 27 8.9
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 281 MDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTV---ASRCRVELINEFLGR 451
MD+++ S S G TST + G +S G R+ V + R R + INE +
Sbjct: 219 MDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKA 278
Query: 452 FME 460
E
Sbjct: 279 LQE 281
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 281 MDSNERSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTV---ASRCRVELINEFLGR 451
MD+++ S S G TST + G +S G R+ V + R R + INE +
Sbjct: 219 MDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKA 278
Query: 452 FME 460
E
Sbjct: 279 LQE 281
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 553 CNWTFHIRLYNCS-REWTYISTWVLDXXXXXXXNI 654
C W F + C+ +W +STWV D N+
Sbjct: 90 CRWNFRLLTGECTLTQWYGVSTWVFDPGINGGINL 124
>At2g36790.1 68415.m04512 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 531 TGFPCNLMQLDLPYQAIQLQQG 596
+G P NL+Q+ PYQ LQ+G
Sbjct: 64 SGLPINLVQVKFPYQEAGLQEG 85
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 353 RRSPHGGGKYRKQHR 397
RRSPHG G+ ++QHR
Sbjct: 405 RRSPHGNGEGKRQHR 419
>At5g03700.1 68418.m00330 PAN domain-containing protein contains
Pfam profile: PF00024 PAN domain
Length = 482
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 479 ARSWRSKSSFEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTF 610
+ W+ ++ EP L L+ GF +PD++ S T + +F
Sbjct: 23 SHKWQRVNAVEPVLELVKGFEAKPDSSIDSFQPLLTDSNGNFSF 66
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 296 RSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRV 424
R+ C + T Q R G+++ G R +RCTVA C V
Sbjct: 226 RARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPV 268
>At1g18860.1 68414.m02348 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 480
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 296 RSCCHSGTGATSTQTRCRGRRSPHGGGKYRKQHRCTVASRCRV 424
RS C + T Q R G++ G R +RCT+A+ C V
Sbjct: 182 RSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPV 224
>At3g58490.1 68416.m06519 phosphatidic acid phosphatase family
protein / PAP2 family protein similar to
sphingosine-1-phosphate phosphohydrolase from [Mus
musculus] GI:9623190, [Homo sapiens] GI:23345324;
contains Pfam profile PF01569: PAP2 superfamily
Length = 416
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 431 INEFLGRFMESMGMGLARSWRSKSSFEPTLPLID---GFPMQPDATGPSISGYTT 586
I+ +LGR M + L + SKS + TLP++ G P++ P + GY +
Sbjct: 305 ISSYLGRVMVGIPTILLVKFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYAS 359
>At4g18030.1 68417.m02684 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 621
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 453 NRPRNSLMSSTLHLEATVHRCCFRYFPPPW 364
N P N+ STL L V CCF Y W
Sbjct: 6 NPPGNNRSRSTLSLLVVVGLCCFFYLLGAW 35
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 315 PLWQQLLSLLSIAEPMPPSRL 253
P+W + L +LSI EPMPP ++
Sbjct: 273 PVWNETL-MLSIPEPMPPLKV 292
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 157 QPKMYSNKDA-ANPGYPTQWALNPTAYQNVDCSESTGRHWLSNG 285
QP MY +N G+P+ + P Y S + H SNG
Sbjct: 374 QPSMYDGAGGRSNSGFPSGYLSEPYTYSGSPMSSAKPPHISSNG 417
>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
ontains Pfam profile PF00032: Cytochrome
b(C-terminal)/b6/petD; 99% identical to apocytochrome B
(GI:6851014), cytochrome b (GI:402962), and Cytochrome b
(Swiss-Prot:P42792) [Arabidopsis thaliana]
Length = 393
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 225 WIQGPLGGISWICRILVGIHFRLNYT 148
W GPL GI + +I+ G+ ++YT
Sbjct: 36 WGFGPLAGICLVIQIVTGVFLAMHYT 61
>At1g58060.1 68414.m06580 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1459
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 398 CTVASRCRVELINEFLGRFMESMGMGLARSWRSKSSFEPTLPLIDGFPMQPDATG 562
CT + F+ + +E L S SSFE +LPL+D + D G
Sbjct: 519 CTTIQSTEEDRRANFVDKLLEEDSFSLTTS---SSSFENSLPLVDSYVKDKDDLG 570
>At1g52060.1 68414.m05873 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 293
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 433 QRIPGAVHGINGDGVGQVMEI 495
Q + G++HG++G G Q+ EI
Sbjct: 49 QSVEGSIHGVSGSGFTQMFEI 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,461
Number of Sequences: 28952
Number of extensions: 378566
Number of successful extensions: 933
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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