Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00768
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 44 3e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 8e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 5e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 7e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 37 0.002
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.002
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.004
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.016
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.021
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.021
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.048
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.083
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.19
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.44
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 29 0.77
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 1.0
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 2.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 4.1
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 5.5
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.2
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 7.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 9.5
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 402
CDI IPR TR SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 36 CDIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
F + I + RD TR S G+A+V F D E+ALD ++ ++ GR R+
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+S+GF FV + +A +A+ M+ RML G+ L V +A
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L P F K + +I IP R GFAFV +R+ AEEA+++++G +DGR + V
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 400 A 402
A
Sbjct: 183 A 183
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 283 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
T E+RG+ FV F DA+ A + + L GR LR+ A
Sbjct: 42 TGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 5e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 259 IYIPRDRYTRESR----GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ IP R R +R G AFV F + D ++A++T++G+ LD RE+ VQ A
Sbjct: 73 VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I D T SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 218 IMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+I+IPRDR GF F F +D E A ++ L G+ +RV A
Sbjct: 39 NIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA 87
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 232 FRKVRRSC-DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
FR + SC I D T SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 202 FRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F K + I R+ T+ SRGF F+ F +A A+D ++ + GR L VQ A
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/90 (26%), Positives = 43/90 (47%)
Frame = +1
Query: 130 QNELRKTSATNRWHGLVKSR*SYLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAF 309
+N+LR A + + + S+ + ++ F K I + DR+T+ GF F
Sbjct: 19 KNDLRALDAVKQSNCVYVGNLSFYTTEE-QIYALFSKCGEIRRIIMGVDRFTKTPCGFCF 77
Query: 310 VRFFERRDAEEALDTMDGRMLDGRELRVQM 399
V +FE +DA ++L + LD R +R +
Sbjct: 78 VEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
FR+ +Y+ +D+ T ++GFAFV +++R A +A D +DG
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
F + DI + RD+ T +S+GFAF+++ ++R A+D M L R +RV
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
I + R++ T +S G+AFV F RD + A G ML+GR + V +
Sbjct: 129 IRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDV 175
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S GF FV F ++ A A+ M+G +LDG +L ++++
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ +P+ ++ R +RGFAF F R+A A+ + L GR L +Q A
Sbjct: 750 VRVPK-KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ I RD T +GFA+++F + ++AL + +M +GR LR+ A
Sbjct: 299 VRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.021
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.048
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+++ RD R S+GF ++++ A AL+ M+G L GR +RV
Sbjct: 369 VHLQRDDQNR-SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D I RD+ + S+G A+V F D+ +A + G+ L G + VQ+
Sbjct: 268 DAQIVRDKISGRSKGVAYVEFC-HEDSVQAAIALSGKRLLGLPVIVQL 314
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.083
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+GF F F DAE A+ +DG+ G +L Q A
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 280 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
Y +E G VRF +AE + M GR DGR
Sbjct: 292 YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RF K+ SC + RD+ T +S +AF+ F + E+A M ++D + V +
Sbjct: 266 RFGKII-SCQVI--RDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 185 VDNLTYRTTPEDLRRVFERCGEVVISTFPEIGTQGKVEDSPS*GFSSVVTLKK 343
V NL++ T +DL F CG++ P G+++ FS + + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEV 253
S+ V N+ Y TPE+L+ F CG V
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSV 81
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 399
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 149 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVVISTFPEIGTQGK 292
P R DG + + L + TT + LR FE+ GEV+ T T G+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLD 375
F + D + RD T SRGF F+ F + E + +DG+++D
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID 233
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 316 FFERRDAEEALDTMDGRMLDGRELRV 393
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 307 FVRFFERRDAEEALDTMDGRMLDGRELR 390
++ + + DA A+ +DG + DGR LR
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 194 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 87
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 508 GCGYDCASNYDGGNETWTCACD 443
GC + Y+GG +TW C+ D
Sbjct: 90 GCNDLVPNVYEGGYKTWECSLD 111
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++++ DR T +G+A + + A++A+D + +LD +L V A
Sbjct: 38 NLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLD-EKLEVDFA 85
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 283 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
T + RG A V FF+ A A+ + + G+E+++Q A
Sbjct: 42 TPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYA 81
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
R+R T S+ +AF+ F A +TM +L G+ L+ ++
Sbjct: 138 RNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,045
Number of Sequences: 5004
Number of extensions: 41763
Number of successful extensions: 166
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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