Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00768
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 47 2e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 46 3e-05
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 45 6e-05
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 45 6e-05
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 42 3e-04
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.005
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.012
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 37 0.012
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.029
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.029
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.029
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.050
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 34 0.088
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.088
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.088
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 33 0.27
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.35
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.62
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.1
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 1.1
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 29 2.5
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 2.5
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 2.5
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 29 2.5
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.3
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085) 29 3.3
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.3
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 4.4
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9) 29 4.4
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 5.8
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 28 5.8
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 5.8
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 28 7.6
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 68.1 bits (159), Expect = 6e-12
Identities = 38/91 (41%), Positives = 46/91 (50%)
Frame = +2
Query: 146 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVVISTFPEIGTQGKVEDSPS*GFSS 325
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++ P + F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 326 VVTLKKPWTRWTDECWTAGNFAFRWRDMVAP 418
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 372
F+K DIYIPRDR T ESRGFAFVRF+E+RDAE+A+D MD L
Sbjct: 36 FKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCL 82
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D+ + DR T+ RGFAFV F +++ E+A++ +DG+ DGR ++V A
Sbjct: 257 DVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQA 305
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T RGF FV F + ++A+D DG LDGR ++V A
Sbjct: 43 DRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKA 85
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
+P DR SRGFA+V + + + E+AL MDG +DG+E+ VQ
Sbjct: 1188 LPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D+ + DR T RGF FV F + + E+A+D DG+ DGR ++V A
Sbjct: 32 DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
FR + I++ +D++T +S+GFAF+ F R DA A++ + G D L V+ A
Sbjct: 201 FRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWA 257
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 235 RKVRRSCDIYIP-RDRYT-RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R++ R + + P RD + R GFAF F +RRDAE+A+ +DGR + G+ RV++A
Sbjct: 16 REIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ I DR T RGF FV F + + E+A+D DG+ LDGR ++V A
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F + + + I RD+ TRESRG AF+ F +R+ A+ A+ ++ + + GR ++ +A
Sbjct: 30 FERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIA 86
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R GFAF F +RRDAE+A+ +DGR + G+ +RV++A
Sbjct: 65 RNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D+ IP D T + RGF FV F D A+D M+ L GR +RV +A
Sbjct: 33 DVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR + ESRGF FV + + A++ L M G +DGR++R+ A
Sbjct: 320 DRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++++P+DR T+ +G+ FV F DA+ A+ M+ + G+ +RV A
Sbjct: 41 NVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKA 89
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I RD T S+GFAF+ F ++ A++ M+G+ L R + V A
Sbjct: 132 IMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D+ L F K R +++ R+ GFAFV + + RDAEEA+ +DG + R +
Sbjct: 16 DSSELERAFEKFGRLSKVWVARN-----PPGFAFVEYEDYRDAEEAVRELDGANVCDRTI 70
Query: 388 RVQMA 402
RV+ +
Sbjct: 71 RVEFS 75
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 366
D+++ +D+ T+E+RG +V+F + A A + MDGR
Sbjct: 51 DVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGR 87
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + +D +S+GF FV F R DA +A+ MD + G++++ A
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RDR T +S G+AFV + DA +A+ M+G L + L+V A
Sbjct: 60 RDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
E RG FVRF +R +A+ A+D ++ + L G +++
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 250 SCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SC++ RD+ T ES +AF+ F + D E A MD ++D R + V +
Sbjct: 148 SCEVI--RDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHVDFS 196
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T S+G+ FV+F E A+ A++ M+G L GR L++
Sbjct: 276 DSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
FAFV F + RDAE+A+ DG DG +RV+
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVE 333
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RG+ FV F + RDAE+A+ ++GR L G + V+ +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
SRGF FV F DA+ A+ +++G+ + GR L++
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R+ R + FV F +R A +A+D ++G +DG +L V +A
Sbjct: 32 RKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
++ + RD+ T + +GF F+ + ++R A+D +G L GR +RV
Sbjct: 7 NVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
+S+GF FV F +AEEA++ ++G+ + GR L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+GF FV F +A +A+ M+GR+L + L V +A
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALA 287
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLDGR 381
C++ + D TR SRGF FVRF + DA+ L T + GR+ + R
Sbjct: 144 CEVKL--DPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVR 187
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 238 KVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
K++ Y DR ++ + +AFV F ER A +A++ DG+ +DG ++ +A
Sbjct: 344 KLKEEYSQYGAVDR-VKKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLA 397
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T + +G+ F + ++ A A+ ++G L+GR LRV A
Sbjct: 59 DRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSA 101
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
RG+AF+ + RD A DG+ +DGR + V +
Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDV 81
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +1
Query: 196 YLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD 375
+ N+ + +F V R I + R + + S+G+AFV F A+ A DTM M+
Sbjct: 109 FFENEIKKFFEQFGTVNR---IRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMF 165
Query: 376 GRELR 390
GR L+
Sbjct: 166 GRLLK 170
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
SRGFAFV + +AE+ +GR ++G +RV
Sbjct: 246 SRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 360
+ I RD TRE++G+ +V+F + A AL+ D
Sbjct: 82 VQIVRDHKTRENKGYGYVKFHKSSTAAMALENCD 115
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 193 SYLPNDA*RLTPR--FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 366
+Y+P D T R F V + I R + + S GF FV + DA++A+D ++G
Sbjct: 52 NYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGF 111
Query: 367 MLDGRELRV 393
+ + L+V
Sbjct: 112 TIGNKVLKV 120
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D + +GFAFV + A+ AL+ M+G +L GR ++V
Sbjct: 136 DPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
GF FV F +A +A + ++G ++DGR++ V +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 179 LKVDNLTYRTTPEDLRRVFERCGEV 253
L V +L + TT ++LR FE+CGE+
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGEL 262
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SRGF FV + D E+ DG +GR L+V A
Sbjct: 82 SRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
++ IP D+ T + R F FV F A + +DG L R + V+
Sbjct: 485 NVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAINVK 531
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
L F K + + RD T+ SRGF F+ F + + + L++ + LDG+++
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNS-GAQELDGKKM 178
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + A+ A+ M+G + + L+VQ+
Sbjct: 296 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + A+ A+ M+G + + L+VQ+
Sbjct: 311 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
++S+G V+F +A A++ + G+ML R LRV+M
Sbjct: 222 KKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVRM 259
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 448 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 347
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 280 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ + +GF F+R R AE A +D GR LRV+ A
Sbjct: 82 FINKEKGFGFIRLDTRLHAEAAKAGLDMATRKGRTLRVRFA 122
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 VVISTFPEIGTQGKVEDSPS*GFSSVVTLKKPWTR-WTDECWTAGNFAFRWRD 406
V++ P I G + P+ + + K P R WT G F ++WR+
Sbjct: 9 VLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWRE 61
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+DR T++S+G+ FV DA E M++GR+ V +A
Sbjct: 43 KDRVTKKSKGYGFVT-MATSDAAELACKNKRPMIEGRQANVNLA 85
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 128 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVVISTFPEIGTQG 289
+K+S+ R P+I S V T TTPE+LR++ E G I TF QG
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG---IKTFTNKMDQG 1571
>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
Length = 292
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGR-MLDGRELRVQMA 402
+AFV+F+ + A A + ++G+ ++DG L+VQ A
Sbjct: 80 YAFVKFYSAKAALRAKEEVNGKWLIDGNILKVQFA 114
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMA 402
D T+ S+G AFV++ + L D G LDG L+V +A
Sbjct: 450 DHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVDLA 496
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
++ +G + F +RD + AL +DG L+G+ +R+
Sbjct: 130 KQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 508 GCGYDCASNYDGGNETWTCACDRNDSC 428
GCGY C NY GN CD N C
Sbjct: 174 GCGYGCDGNYGCGN-----GCDGNYGC 195
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I RD+ + SRGF FV A++ M+ + GR + V +A
Sbjct: 39 ILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALA 84
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -1
Query: 481 YDGGNETWTCACD---RNDSCMAMRGDHIAPSEREVPCR 374
YDG T D ND + M G H AP R++ C+
Sbjct: 332 YDGDRNTQIALMDMPHENDVVVEMNGRHAAPRHRKIRCQ 370
>SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)
Length = 199
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 295 YFPLCTDLWECRYHNFSAPF 236
YFP C +L CRYH SA F
Sbjct: 144 YFPCC-ELGHCRYHTSSADF 162
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
F FV+F + A+EA+ GR+++G+++ V++
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 164 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVV 256
D + L V L+Y TT E L+ F + GE+V
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELV 56
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEAL 348
+ +PR ++ E +GFAF+ F ++ AE +
Sbjct: 117 VSLPRFKHNGEIKGFAFIEFESKQQAEHVV 146
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR----MLDGR 381
DI + +D+ T SRGF FV +A + L+ + M+DGR
Sbjct: 438 DIRLIKDKVTGTSRGFCFVELATIEEATQLLELIAAMNPPFMIDGR 483
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 360
LT F K I RD+ + +S+G+ FV F + D +A+ M+
Sbjct: 233 LTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,549,305
Number of Sequences: 59808
Number of extensions: 333394
Number of successful extensions: 1034
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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