Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00768
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 83 1e-16
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 83 1e-16
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 43 2e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 43 2e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 43 2e-04
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 0.001
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 0.001
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 40 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 39 0.003
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 39 0.003
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 38 0.006
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.006
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.008
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 38 0.008
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 37 0.011
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.019
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.019
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.019
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.019
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 36 0.019
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 36 0.019
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 36 0.019
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 36 0.019
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 36 0.019
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.025
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.025
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 36 0.025
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 36 0.025
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 36 0.033
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.033
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.033
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 35 0.044
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 33 0.13
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.13
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 33 0.13
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.18
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 33 0.18
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.54
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 31 0.54
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.54
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.54
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.54
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.54
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 31 0.94
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.2
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 1.2
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 30 1.6
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 30 1.6
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 2.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 2.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 2.9
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.7
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 6.7
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.7
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.7
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 27 8.8
U67953-2|AAL13327.1| 340|Caenorhabditis elegans Hypothetical pr... 27 8.8
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 27 8.8
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 83.4 bits (197), Expect = 1e-16
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +1
Query: 202 PNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
PND R R+ + D++IPRD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGR
Sbjct: 32 PNDLRRTFERYGDIG---DVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
Query: 382 ELRVQMA 402
ELRV +A
Sbjct: 89 ELRVTLA 95
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +2
Query: 146 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 253
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDI 45
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 83.4 bits (197), Expect = 1e-16
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = +1
Query: 202 PNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
PND R R+ + D++IPRD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGR
Sbjct: 32 PNDLRRTFERYGDIG---DVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
Query: 382 ELRVQMA 402
ELRV +A
Sbjct: 89 ELRVTLA 95
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +2
Query: 146 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 253
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDI 45
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F + + ++ I DR T RGFAF+ F E A+ A++ M+G +GR LRV +A
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D+ +L F K + I RD T + +G+ FV + R DAE A+D M+G L R +
Sbjct: 144 DSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
Query: 388 RVQMA 402
R A
Sbjct: 204 RTNWA 208
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F + ++ I DR T RGFAFV F E A+ A+D +G +GR LRV +A
Sbjct: 24 FSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F V ++ I DR T RGFAFV F E A+ A++ ++G +GR LRV A
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
I + RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 86 IRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
I + RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 86 IRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 145 KTSATNRWHGLVKSR*SYLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFE 324
K T +H V S + N +L F+ D + RD T +S+G+ FV + +
Sbjct: 15 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 72
Query: 325 RRDAEEALDTMDGRMLDGRELRVQMA 402
R +AE A++ M+G+ L R +R A
Sbjct: 73 REEAERAIEQMNGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 145 KTSATNRWHGLVKSR*SYLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFE 324
K T +H V S + N +L F+ D + RD T +S+G+ FV + +
Sbjct: 25 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 82
Query: 325 RRDAEEALDTMDGRMLDGRELRVQMA 402
R +AE A++ M+G+ L R +R A
Sbjct: 83 REEAERAIEQMNGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 145 KTSATNRWHGLVKSR*SYLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFE 324
K T +H V S + N +L F+ D + RD T +S+G+ FV + +
Sbjct: 128 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 185
Query: 325 RRDAEEALDTMDGRMLDGRELRVQMA 402
R +AE A++ M+G+ L R +R A
Sbjct: 186 REEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+AFV F + A +AL TM+ R+L RE++V A
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 145 KTSATNRWHGLVKSR*SYLPNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFE 324
K T +H V S + N +L F+ D + RD T +S+G+ FV + +
Sbjct: 96 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 153
Query: 325 RRDAEEALDTMDGRMLDGRELRVQMA 402
R +AE A++ M+G+ L R +R A
Sbjct: 154 REEAERAIEQMNGQWLGRRTIRTNWA 179
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 61 IRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 61 IRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 61 IRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 396
L P F K + D+ + D + SRG+AFV + + DA A T DG + G+ L+V
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
Query: 397 MA 402
++
Sbjct: 276 VS 277
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 262 YIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
Y DR ++ + +AF+ F ER D +A++ +G+ L+G + +A
Sbjct: 400 YASLDR-VKKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F K + + RD T++S+G+ FV F +++AE A+ M+G+ + R +R
Sbjct: 151 LKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNW 210
Query: 400 A 402
A
Sbjct: 211 A 211
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 402
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 402
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 402
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S GF FV+F+ DA+ AL M G +LDG L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
F+K ++ + D+ T +GFA V F A A +DG + GR + +
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 277 RYTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
+YT+E RGFAFV F + A AL + + ++L V+
Sbjct: 35 KYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVE 76
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I IP D + + RGF FV F DA A+D M+ L G+ +RV A
Sbjct: 40 ISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 256 DIYIPRDRYTRE-SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
++ +P DR+ RG+ +V + DAE+++ MDG +DG + V+M
Sbjct: 161 NVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
F K+ R I+I RD+ T +GFAFV F R DA A+ ++ + L+V+
Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVE 250
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ +P+DR T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 42 VNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I RD + S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ +P+DR T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 52 VNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I RD + S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 142 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 462 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRE 384
D RL ++ V SC+I RD+ T+ S+G FV F+ R+DA EA + ++++G
Sbjct: 70 DCRRLFEKYGSVF-SCNIL--RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMH 126
Query: 385 LRVQM 399
VQM
Sbjct: 127 HPVQM 131
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RF K+ +C+I RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 263 RFGKIN-NCEIV--RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RF K+ +C+I RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 263 RFGKIN-NCEIV--RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RF K+ +C+I RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 194 RFGKIN-NCEIV--RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 36 RRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 36 RRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 36 RRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 390
DR+ + GF FV ++ R DAE AL + +D R +R
Sbjct: 71 DRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIR 109
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 164 DGMVSLKVDNLTYRTTPEDLRRVFERCGEV--VISTFPEIGTQG 289
DG L V N+ +R DL+ +FE+ G V V F E G++G
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKG 193
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 164 DGMVSLKVDNLTYRTTPEDLRRVFERCGEV--VISTFPEIGTQG 289
DG L V N+ +R DL+ +FE+ G V V F E G++G
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKG 193
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
L FRK + R+ T +S+G+ FV F + D A+ MDG+ + R ++++
Sbjct: 219 LAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
CD+ DR + SRGF F+ F DA A D + LDG ++RV +
Sbjct: 105 CDLVY--DRPSGNSRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+ I DR++ +GFA+V F E+ + AL M +L GR+++V
Sbjct: 107 VTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKV 150
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGREL 387
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGREL 387
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGREL 387
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
LT F KV D+ I + R S+GF FV DA+ A +G ++GR + V +
Sbjct: 116 LTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
Query: 400 A 402
A
Sbjct: 174 A 174
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+I + RD+ T +S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 66 NINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
LT F KV D+ I + R S+GF FV DA+ A +G ++GR + V +
Sbjct: 116 LTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
Query: 400 A 402
A
Sbjct: 174 A 174
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
IP+D++T++ + FA++ F + E AL M+G + R + V
Sbjct: 86 IPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 127
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEVVISTFPE 274
S+ + N+ + +T E++ F+ CG++V +T P+
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPK 88
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
IP+D++T++ + FA++ F + E AL M+G + R + V
Sbjct: 92 IPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 133
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEVVISTFPE 274
S+ + N+ + +T E++ F+ CG +V +T P+
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPK 94
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 375
DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 51 DIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+ IP+D++T + FAFV F + + AL + G M R++ V +
Sbjct: 75 VTIPKDKFTGYQKNFAFVEFQKLESVQLAL-VLSGTMFRNRKIMVTL 120
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 375
DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 13 DIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 375
DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 13 DIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 375
DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 51 DIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 375
DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 51 DIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DI++ DR + +GFA+V F + A+ ++G R L+V A
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRA 88
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
F KV D+ I + R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 2 FEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+F + + +I++ DR T +G+A V + +++A EA+D + L G+ ++V
Sbjct: 74 KFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGREL 387
GF FV F ++RDA++A+ ++G+ L G +
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERV 65
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 369 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+ I RD+ T + +GFAFV F + AL +M+ ++ R+LR+
Sbjct: 276 VRIVRDKDTGKGKGFAFVNFKQDSSVSLAL-SMETIKMEKRDLRI 319
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ RD T+ +RGF F+ F + ++ L+ + LDG+++ ++A
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKIDPKVA 120
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ RD T+ +RGF F+ F + ++ L+ + LDG+++ ++A
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKIDPKVA 120
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 378
D T S+G FVRF ++ +A+ A+ T++G + G
Sbjct: 162 DNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALD 351
D + RD T+ SRGF FV F AE A++
Sbjct: 77 DAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALD 351
D + RD T+ SRGF FV F AE A++
Sbjct: 97 DAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALD 351
D + RD T+ SRGF FV F AE A++
Sbjct: 98 DAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 164 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 309 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
RG+AF+ + ++ + A DG +DG+ L V
Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 DIYIPRDRYTRES-RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+I +P R ++ GF F++F E+ DAE+ + + + GR + A
Sbjct: 123 EIVLPPSRKDPKTCAGFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWA 172
>U67953-2|AAL13327.1| 340|Caenorhabditis elegans Hypothetical
protein ZC13.1a protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 396 LNAKFPAVQHSSVHRVQGFFSVTTLEKPHEGESSTFP 286
L+A FP + S +Q FF + E ++ S++FP
Sbjct: 22 LSAHFPQIPSSMHDGIQSFFGGSNTEYQNQSTSASFP 58
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 396 LNAKFPAVQHSSVHRVQGFFSVTTLEKPHEGESSTFP 286
L+A FP + S +Q FF + E ++ S++FP
Sbjct: 22 LSAHFPQIPSSMHDGIQSFFGGSNTEYQNQSTSASFP 58
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,898
Number of Sequences: 27780
Number of extensions: 242268
Number of successful extensions: 820
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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