Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00768
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 70 2e-12
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 70 2e-12
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 58 5e-09
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 57 1e-08
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 54 8e-08
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 53 2e-07
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 52 3e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 50 1e-06
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 48 7e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 4e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 44 7e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 44 7e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 9e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 1e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 43 2e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 2e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 43 2e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 3e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 42 5e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 41 6e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 41 6e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 41 6e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 41 6e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 41 8e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.001
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.001
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 40 0.002
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 40 0.002
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 40 0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 39 0.003
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.003
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.003
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 39 0.003
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 39 0.003
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 38 0.004
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.006
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.006
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.008
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.010
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.010
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.013
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.013
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.013
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.013
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.024
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.024
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 36 0.024
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.024
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.031
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.031
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.031
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.031
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 35 0.041
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 35 0.041
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.041
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 35 0.041
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.041
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.041
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 35 0.054
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.054
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.054
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 34 0.072
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 34 0.072
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.072
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 34 0.072
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.072
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.072
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 34 0.095
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.095
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 33 0.17
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 33 0.17
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 33 0.17
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.17
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.17
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 33 0.17
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 33 0.17
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.17
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.22
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.22
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.22
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.22
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.22
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.29
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.29
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 32 0.38
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.38
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 32 0.38
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 31 0.51
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.51
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.51
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.51
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.67
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.67
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.67
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.67
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 0.67
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.67
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.88
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.88
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.88
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 1.2
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.2
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.2
At1g63610.2 68414.m07192 expressed protein 30 1.2
At1g63610.1 68414.m07191 expressed protein 30 1.2
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.2
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 1.2
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.5
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 2.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 2.0
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.0
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 29 2.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.0
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 29 2.7
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 2.7
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 2.7
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 2.7
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 2.7
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.6
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 29 3.6
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 29 3.6
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 28 4.7
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 28 4.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 28 4.7
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 28 4.7
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 28 4.7
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 4.7
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r... 28 4.7
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.7
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 6.2
At1g70750.1 68414.m08155 expressed protein contains Pfam profile... 28 6.2
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 27 8.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 8.2
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L P F K + D++IPRDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 400 A 402
A
Sbjct: 92 A 92
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 140 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVV 256
+GR PP I SL V N+T+RTT +DL +F + G+VV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVV 43
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L P F K + D++IPRDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 400 A 402
A
Sbjct: 92 A 92
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 140 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVV 256
+GR PP I SL V N+T+RTT +DL +F + G+VV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVV 43
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DIY+PRD YT + RGF F++F + DA EA MDG +L GREL V A
Sbjct: 65 DIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DIY+PRD YT + RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 64 DIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 54.0 bits (124), Expect = 8e-08
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RF VR D+YIPRD Y+ + RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 69 RFGPVR---DVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 202 PNDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
PND RF ++ DIY+PR+ YT E RGF FV++ DA EA+ M+ +++ GR
Sbjct: 60 PNDLRDSFERFGPLK---DIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGR 116
Query: 382 ELRVQMA 402
E+ + A
Sbjct: 117 EIAIVFA 123
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +1
Query: 205 NDA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 384
+D L F KV R + + +DR+TR+SRG AFV + R DA +A +MD ++L+GR+
Sbjct: 71 SDIHTLFSTFGKVAR---VTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRK 127
Query: 385 LRVQMA 402
L V +A
Sbjct: 128 LTVSIA 133
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D + RDRYT SRGF FV + +AE A+ MDG+ L+GR + V++
Sbjct: 31 DAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/49 (46%), Positives = 28/49 (57%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D+ P D+ ++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 41 DVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/61 (40%), Positives = 31/61 (50%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F ++ I D+ + SRGF FV F E DA A D MDG+ L GR LR+
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 116
Query: 400 A 402
A
Sbjct: 117 A 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 69 DRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 69 DRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F K + + D+++ SRGF F+ F E++ +EA+ M+G LDGR + V
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 400 A 402
A
Sbjct: 83 A 83
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D+ RL F + + D + DR T SRGF FV+ + A+ +DG+ L+GR +
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAI 278
Query: 388 RVQMA 402
+V +A
Sbjct: 279 KVNVA 283
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+R T +SRGF FV +AE+A++ + ++GR L V A
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F K + D+++ D +TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 91 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
Query: 400 A 402
A
Sbjct: 151 A 151
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/61 (39%), Positives = 29/61 (47%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F K D + DR T SRGF FV F A A+ +DGR L GR ++V
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 400 A 402
A
Sbjct: 116 A 116
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
RL F + + + + DR T SRGF FV + + EA+ +DG+ L+GR +RV
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 397 MA 402
+A
Sbjct: 319 VA 320
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+R T +SRGF FV +AE A++ + L+GR L V A
Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
RD T+ +GF F+ F DA +AL ++DG+++DGR + V++A
Sbjct: 40 RDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 250 SC-DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SC D + D+ T SRGF FV F ++DA+ A++ M+G+ L R++R A
Sbjct: 169 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 93 KDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+Y+ D+ T SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 242 VYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D I DR T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D I DR T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/61 (42%), Positives = 31/61 (50%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F K D I DR T SRGFAFV F +A A+ +DG+ L GR +RV
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNY 108
Query: 400 A 402
A
Sbjct: 109 A 109
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 402
D+ + RD++T SRGFAFV F+ DA +AL+ + L+ G+ LRV A
Sbjct: 486 DLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYA 536
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGREL 387
+ + R++ + SRGFAF+ F A +D + DG +LDGR+L
Sbjct: 327 VRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKL 371
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
L F K + D+++ D +TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 61 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + +D + S+G+AF++F + DA A++TMD RM +GR + + +A
Sbjct: 68 EVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIA 116
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 250 SC-DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SC D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 173 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 97 KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D I DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D I DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D I DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D + D+ T SRGF FV F ++DA+ A+D + G+ L R++R A
Sbjct: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+E + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 88 KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 97 KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
RL F + + ++ I + TR+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 92 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR + S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D+ T SRGF FV + E A +G LDGR LRV
Sbjct: 125 DKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R+ K+ C I + RD T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 34 RYGKITE-CQIMVGRD--TGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 229 RFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R+ K+ C I + RD T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 34 RYGKITE-CQIMVGRD--TGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+R T SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D+ I D+ T SRGF FV +A+EA+ + + GR ++V
Sbjct: 144 DVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D T SRG+ FV + + + E AL+++DG L+GR +RV +A
Sbjct: 211 DGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+R T +SRGFAFV D +D +DG GR L+V A
Sbjct: 119 NRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L+ F K + + I DR + S+GF FV F +A++AL +G+ L+GR + V
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDY 109
Query: 400 A 402
A
Sbjct: 110 A 110
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D++IP++ T +GFAFV+F ++DA A+ +G M R + V A
Sbjct: 359 DVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 262 YIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ ++ + E RGFAFV+F + D A++ +G + GR + V+ A
Sbjct: 50 FLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQA 96
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
DR T S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 78 DRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+D+ T+ +GF F+ F DA++AL ++G++++GR + V+ A
Sbjct: 99 KDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR + S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 283 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D+ T SRGF FV + E A +G +GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR + S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 291 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D+ T SRGF FV + E A +G +GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+++ D+ T + +G+AF+ + RD + A DG+ +DGR + V +
Sbjct: 167 VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/46 (34%), Positives = 32/46 (69%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D+ + RD+ T +S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 64 DVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 262 YIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
++ D+ T SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 204 HVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
C I + RD T SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 36 CQIMLERD--TGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F FV + + A+ A+D M+GR L G++L+VQ+
Sbjct: 383 DKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 378
L F + D + DR + S+GF FVR+ D+ + + MDG+ LDG
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDG 124
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 155 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 253
P+ + +L V L+ RTT E LR F + GEV
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEV 82
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++Y+P+DR T + + F+ + DA+ A+ ++ L G+ +RV A
Sbjct: 53 NVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA 101
Score = 34.3 bits (75), Expect = 0.072
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 265 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
I RD T SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D+ +GFAF+R+ +A +A+ M G+ LDGR + V+ A
Sbjct: 111 DKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVV 256
S L S PP G L V L++RTT + LR FE+ G ++
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLI 104
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D RL F K + I RDR T +RGF F+ F + AE + MD ++DGR +
Sbjct: 27 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--MDKHIIDGRTV 84
Query: 388 RVQMA 402
+ A
Sbjct: 85 EAKKA 89
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 301 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ FV F RDAE+A+ DG LDG LRV++A
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 185 VDNLTYRTTPEDLRRVFERCGEVV 256
V NLT+RTT +DLRR FE+ G+VV
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVV 39
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+DR T S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+DR T S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
L F K + ++ + TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 88 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
L F K + ++ + TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 87 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 283 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
T +S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 214 TSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 33.9 bits (74), Expect = 0.095
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+ + D+Y+ SR F F DA ++ ++G ++GRE++V +
Sbjct: 105 VQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D T S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 237 DSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 373 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 364 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
D+Y+ RD Y R+SRG FV++ + A A+D ++G
Sbjct: 239 DVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
D+Y+ RD Y R+SRG FV++ + A A+D ++G
Sbjct: 239 DVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 381
LT F + + + + D+ +GFA+V F + +AE+AL ++ +++DGR
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D T S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ T SRG+ FV F A A+ M+G+ L+G + V +A
Sbjct: 65 NKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 390
+ I DR RG +V F R DAE+A MDG +DG+ ++
Sbjct: 127 VEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 390
+ I DR RG +V F R DAE+A MDG +DG+ ++
Sbjct: 127 VEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 220 LTPRFRKVRRSCD-IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 390
LT F+ V S + DR T S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 378
+L F + D + DR + S+GF FV + DAE+A M+ + LDG
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 34.3 bits (75), Expect = 0.072
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 277 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R T R FV FF+ RDA +AL M+G+++ G+ + +Q +
Sbjct: 213 RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D +L F+ + + R+ T ESRG +V A+ A+ ++DG + GRE+
Sbjct: 120 DIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREM 179
Query: 388 RVQ 396
RV+
Sbjct: 180 RVR 182
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
DR T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 189 DRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.9 bits (74), Expect = 0.095
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
F KV RS + +D + ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 40 FGKVIRSV---LAKD-FRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D RL F + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 388 RVQMA 402
+ A
Sbjct: 76 EAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D RL F + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 388 RVQMA 402
+ A
Sbjct: 76 EAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 208 DA*RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
D RL F + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 388 RVQMA 402
+ A
Sbjct: 76 EAKKA 80
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 369
RL F + + ++ I + TR+S G+ +V F + DA+ A++ M+G++
Sbjct: 73 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 131 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERC 244
K S G P +DG + + NL + TT D+R++F C
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC 285
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
F K D I RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRVQM 399
F K + + RD T SRGF FV F D+EE +D + G M+D + +V++
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQVEI 182
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
F K D I RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRVQM 399
F K + + RD T SRGF FV F D+EE +D + G M+D + +V +
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQVSL 182
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L F + D + DR + SRGF FV + A A+ M + LDGR + V
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
Query: 400 A 402
A
Sbjct: 112 A 112
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 277 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
R T ++ FF+ R A+ AL ++G + GR+L++
Sbjct: 325 RRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/49 (24%), Positives = 31/49 (63%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ + +DR + +S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 144 EVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++ I D+ ++ S+G+AF+ + A AL M+G++++G + V +A
Sbjct: 310 EVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
RD+ T +++G+ FV F D AL M+G+ + R ++++
Sbjct: 170 RDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLR 211
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 384
+S+GF FV F DA A+D ++G+ D +E
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SRG FV F +A A+ M+G+M+ + L V +A
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D + +DR T SRGF +V F DA+ AL L R L V++A
Sbjct: 31 DCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKVA 77
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-DTMD 360
F + D+Y+P+D +++ RG F+ F E+ + DT D
Sbjct: 111 FERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD 154
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAE 339
D YIP+D RGF FV F E A+
Sbjct: 268 DAYIPKDPKRSGHRGFGFVTFAENGVAD 295
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 247 RSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
R D++IPRD+ T + +GFAF + A+ A+ G
Sbjct: 32 RVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 137 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVVISTFPEIGTQGKVE 298
+Y PP ++ V NL T E+L++ F + GEV+ P G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D T S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 390
++ I R++ + + +G+AFV F + A EA+DT++ G+ ++
Sbjct: 120 EVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
R +AFV F DA A++++ G L G LR++ A
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 307 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
FV F++ RDA A D M+G+ + G+++ ++ +
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+S+GF FV F +A +A+ T G+M G+ L V +A
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
L +F + + + I +D R RG+AFV F DA A +T++G + L V
Sbjct: 217 LREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGR 275
Query: 400 A 402
A
Sbjct: 276 A 276
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SRGF FV + +A AL M+G+M+ + L + +A
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +1
Query: 283 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
T S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+S+GF FV F DA A+++++G D +E V A
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G FV F +A EA+ + G+M++ + L V +A
Sbjct: 171 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 259 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+ + RD R SRGF FV F +A++A++++ G L ++L V A
Sbjct: 231 VVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G FV F +A L+ M+G+M+ G+ L V +A
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 256 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
D I DR + SRGF FV F + + +A++ M+G
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
C + I D+ T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 133 CTVVI--DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 253 CDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
C + I D+ T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 133 CTVVI--DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +1
Query: 295 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 220 LTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
L F K +++P DR T SRGFA++ D EAL + G + G + V+
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHVE 554
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
F V ++ I ++ T++S+G AF+RF A+ A+ + M++G++ V
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGV 287
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
++RGFAFV +A+ A+D D + GR + V A
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
SRGF FV + +A A+ M+G+M+ + L V +A
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 361 RPSCPGLLQRHDARKTSRRRILYFPLCTDLWEC 263
RP CP L H+ + ++ + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 361 RPSCPGLLQRHDARKTSRRRILYFPLCTDLWEC 263
RP CP L H+ + ++ + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 241 VRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 360
+ R D Y DR +S G+AFV F + RDAE+A+ +D
Sbjct: 18 LERLFDKYGRVDRVDMKS-GYAFVYFEDERDAEDAIRKLD 56
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
+SR F FV F + A A++ M+G ++D +EL V A
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 292 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
S+G FV F +A +A+ M+G+M+ + + V +A
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 396
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 396
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 298 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 396
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVE 70
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 179 LKVDNLTYRTTPEDLRRVFERCGEVV 256
L N+ + +TPED+R +FE+ G V+
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVI 121
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 375
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 375
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEV 253
S+ V N+ Y TPE++++ F+ CG V
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTV 129
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 384
RL F + I +DR T +RGF FV F + AE + +DG++++ ++
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKK 79
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 384
RL F + I +DR T +RGF FV F + AE + +DG++++ ++
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKK 79
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 384
RL F + I +DR T +RGF FV F + AE + +DGR+++ ++
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKK 79
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 384
RL F + I +DR T +RGF FV F + AE + +DGR+++ ++
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKK 79
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 271 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 363
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 31
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Frame = +2
Query: 122 ILLKMSYGRPPPRIDGMVSLKVDNLTYR------------TTPEDLRRVFERCGEVVIST 265
ILL++ GRP RI V +DN T E L R+ RC E V
Sbjct: 669 ILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSEN 728
Query: 266 FPEIGTQ 286
P++GT+
Sbjct: 729 RPDLGTE 735
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
DR T + +G+ F + + A A + ++GR+LRV A
Sbjct: 43 DRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFA 85
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEV 253
S+ V N+ Y TPE++++ F+ CG V
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTV 118
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 163
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 402
D T+ S+GF FV F E A A + +DGR + ++A
Sbjct: 43 DGATQRSKGFGFVTFREVESATRACEN-PNHTIDGRTVNCKLA 84
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 232 FRKVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 396
F K D I +DR T + RGF FV + + ++ + D ++ G+++ ++
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI--QDNHIIIGKQVEIK 114
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEV 253
S+ V N+ Y TPE+++ F+ CG V
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTV 115
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 289 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 176 SLKVDNLTYRTTPEDLRRVFERCGEV 253
S+ V N+ Y TPE+++ F+ CG V
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTV 115
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGR 366
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDPRDARDAIRALDGK 61
>At3g45850.1 68416.m04962 kinesin motor protein-related
kinesin-related protein TKRP125, Nicotiana tabacum,
PIR:T02017
Length = 1058
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 217 RLTPRFRKVRRSCDIYIPRDRYTR-ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 387
RL R IYIP+DRY + E+ A ER + + ++ D R++D +EL
Sbjct: 415 RLKQEVYAAREKNGIYIPKDRYIQEEAEKKAMAEKIERLELQS--ESKDKRVVDLQEL 470
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 238 KVRRSCDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 393
K R ++ + R T SRG+ FV + ++ A + ++DGRE+ V
Sbjct: 86 KYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIV 137
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 286 RESRGFAFVRFFERRDAEEALDTMDGR 366
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDSRDARDAIREVDGK 61
>At1g70750.1 68414.m08155 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593; supporting
cDNA gi|4101563|gb|AF004556.1|AF004556
Length = 442
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 535 HRVPGDVPAHTVVLAHDPD--TEMSLWCESVPVESLSAVLD 651
H GD+P+H ++ HD D E +L ++V +E+ VL+
Sbjct: 21 HEQIGDIPSHQLIPHHDDDDHEEETLEFKTVTIETKMPVLN 61
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 155 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVVISTFP 271
P G L V NL + +DLR+VFE G V + P
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVP 317
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 274 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 399
D T++ +GF F F A+ + R +DG+EL V +
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,716
Number of Sequences: 28952
Number of extensions: 224756
Number of successful extensions: 883
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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