Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00767
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    30   0.33 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   2.4  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   4.1  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   5.4  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 318 NSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRLS 488
           +S  L+ D+ H L  +V L+  L +    R    T  E +   T+GW R E++G LS
Sbjct: 32  DSLALIADSFHMLNDIVSLLVALWA---TRLAHSTSHEPKY--TYGWQRAEILGALS 83


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 194 DLIPSEWQ*RNGYNGCLHHDPISPPV 271
           D+  + WQ R  Y+G  H+DP S P+
Sbjct: 225 DIYNTPWQLRCYYDGGSHYDPYSNPI 250


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/68 (32%), Positives = 25/68 (36%)
 Frame = +1

Query: 274 LSPASAEDYSHHTSQTLQHYSLTRATLCVDLWDSSQRLFPLSTKEQTKEPVAKVACGTHS 453
           LS  S+   SH  S      S TR  L      S  R F   TK    E V K+A     
Sbjct: 48  LSDDSSSSSSHRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDP 107

Query: 454 DGLASRSW 477
           +GL    W
Sbjct: 108 EGLRVCFW 115


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 605 VIGLLFNAINYMLLAGRELSYSRRLSVTEGGGVVLKNGSGEPVLAHAPTD--IARVC 769
           ++GL+ N   ++  + +    S   ++T GGG  L    G P L   P D  IAR C
Sbjct: 229 ILGLVENMSGFVCPSCK--GKSNIFTITTGGGEALAKEMGLPFLGKIPLDPLIARSC 283


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 118 NTRRSRFRNIHIT*KITDVF 59
           N R+    NIH T K+TD++
Sbjct: 52  NVRKELMENIHFTEKVTDIY 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,091
Number of Sequences: 5004
Number of extensions: 60049
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)