Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00767
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    30   1.9  
11_06_0091 + 19967390-19969825                                         29   5.7  
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406     28   7.5  
05_01_0544 - 4740460-4740493,4742042-4743033                           28   7.5  
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089...    28   7.5  

>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 36  QNSNVRKRKTSVIFQVICMFLNRDRLVFSKQQCVT*LQSFILIRAANEKYI 188
           +N N      +V+F+ + + ++ D       QCV  L  FI +R  N +Y+
Sbjct: 290 KNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYL 340


>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 VLPMKSIL*RFNSIGMAMKEWLQWLPPPR---SY*PSCWLSP 282
           ++ +KSI   +NS+ + +    +WLPP R   +Y  SCW+ P
Sbjct: 316 LINLKSIYLCYNSLKIVVDP--EWLPPFRVEKAYFSSCWMGP 355


>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
          Length = 388

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 533 HSPLALERRREEHVDR*PTHDLDASPSECVPQATFATGSFVC 408
           H+ + L RRR        +HDLD  P+   P+++  + + VC
Sbjct: 16  HADVLLPRRRSAGSSTHRSHDLDDGPAPPSPESSCRSNAAVC 57


>05_01_0544 - 4740460-4740493,4742042-4743033
          Length = 341

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 301 SHHTSQTLQHYSLTRATLCVDLWDSSQRLFPLSTKE-QTKEPVAKVACGTHSDG 459
           + H ++ L H +  RAT+CV +  + +++FP    E   +E    VA   +SDG
Sbjct: 23  ARHLARRLVHGAGVRATVCVPV-SAFRKMFPADDGEVVVEEEGGAVAYAAYSDG 75


>02_03_0155 +
           15805683-15805743,15805824-15806105,15808293-15808959,
           15809440-15810490
          Length = 686

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 355 REWHVSTSSVGEFVKCDANNLPPK-PATANRR 263
           R+WH  T  +G F+   AN LPP  P+ A+ +
Sbjct: 29  RKWHHGTQVLGSFITKLANYLPPSVPSYASTK 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,656,769
Number of Sequences: 37544
Number of extensions: 456223
Number of successful extensions: 1103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)