Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00767
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_57286| Best HMM Match : zf-C2H2 (HMM E-Value=8.1)                   29   4.4  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_44300| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.2)            28   7.6  
SB_34123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)                   28   7.6  

>SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +3

Query: 315 TNSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRLSVH 494
           TNS  L+ D+ H L  ++ LI    + +Y +  + T R     NTFGW R EV+G L V+
Sbjct: 39  TNSMALVADSFHMLSDVMSLIIGYFALRYSKKSQRTER-----NTFGWQRAEVLGAL-VN 92

Query: 495 VLFASSL 515
            +F  +L
Sbjct: 93  AVFLIAL 99


>SB_57286| Best HMM Match : zf-C2H2 (HMM E-Value=8.1)
          Length = 234

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 298 YSHHTSQTLQHYSLTRATLCVDLWDSSQRLFPLSTKEQTKEPVAKVACGTHSDGL 462
           + HH SQ LQH  +    L   +WD   R + +   +     V    CG +SD +
Sbjct: 21  FVHHMSQVLQH--VKSKGLIPLMWDDMMREWDVEDLKALSGIVEPNGCGAYSDSI 73


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 349 WHVSTSSVGEFVKCDANNLPPKPATANRRANRIVVEA 239
           W+ S  S+ + VK    N PP+     + A RI+  A
Sbjct: 382 WYGSACSIPDCVKYSGENFPPQLLRVRKEARRIIYSA 418


>SB_44300| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.2)
          Length = 467

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 382 VVMSPTSLHREWHVSTSSVGEFVKCDANNLPPKPATANRR 263
           VVMSP +L+   H +   V    KC  NN+   P T N R
Sbjct: 381 VVMSPVTLNTRLHPAKCFVN---KCFVNNVVMSPVTLNTR 417


>SB_34123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 527 VNALQLGVHSSHGPPPRYPRVIVGSAVIGLLFNAINYMLL 646
           + AL     +   PP + P+VI+  ++  ++FN + +M+L
Sbjct: 145 IRALACADSNGFPPPSKLPKVIITISIATVIFNNVLFMVL 184


>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
          Length = 67

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 21 RLKTPQNSNVRKRKTSVI 74
          RLKTP N+ + +RKTS+I
Sbjct: 8  RLKTPPNAQIARRKTSLI 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,192,391
Number of Sequences: 59808
Number of extensions: 483246
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)