Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00767
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29410.1 68415.m03574 zinc transporter, putative similar to z... 32 0.38
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 29 2.7
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 29 2.7
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 29 2.7
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 29 2.7
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 29 2.7
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 29 4.7
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 28 8.3
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 28 8.3
>At2g29410.1 68415.m03574 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 375
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 318 NSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGR-LSVH 494
NS ++ D H L + GL +L++ K + E RN+FG+ R+EV+ LSV
Sbjct: 80 NSLAVMTDAAHLLSDVAGLCVSLLAIKV------SSWEANPRNSFGFKRLEVLAAFLSVQ 133
Query: 495 VLFASS 512
+++ S
Sbjct: 134 LIWLVS 139
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 36 QNSNVRKRKTSVIFQVICMFLNRDRLVFSKQQCVT*LQSFILIRAANEKYI 188
+N N +V+F+ + + ++ D QCV L FI +R N +Y+
Sbjct: 288 KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYL 338
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 36 QNSNVRKRKTSVIFQVICMFLNRDRLVFSKQQCVT*LQSFILIRAANEKYI 188
+N N +V+F+ + + ++ D QCV L FI +R N +Y+
Sbjct: 288 KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYL 338
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 36 QNSNVRKRKTSVIFQVICMFLNRDRLVFSKQQCVT*LQSFILIRAANEKYI 188
+N N +V+F+ + + ++ D QCV L FI +R N +Y+
Sbjct: 288 KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYL 338
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 36 QNSNVRKRKTSVIFQVICMFLNRDRLVFSKQQCVT*LQSFILIRAANEKYI 188
+N N +V+F+ + + ++ D QCV L FI +R N +Y+
Sbjct: 288 KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYL 338
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 518 ALVVNALQLGVHSSHGPPPRY 580
A VV+ +G H+ HGPPP Y
Sbjct: 107 ATVVDQPPMGFHAHHGPPPSY 127
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 238 LPPPRSY*PSCWLSPASAEDYSHHTSQTLQHY 333
L PPRS P L P SAE++ HT T+ HY
Sbjct: 482 LRPPRSG-PGASLPP-SAEEFCQHTVTTIWHY 511
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 318 NSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRL 485
NS +L D H L + +L S G E R T+G+ RIE++G L
Sbjct: 80 NSLAILTDAAHLLSDVAAFAISLFSLW------AAGWEATPRQTYGFFRIEILGAL 129
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 318 NSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRL 485
NS +L D H L + +L S G E R T+G+ RIE++G L
Sbjct: 80 NSLAILTDAAHLLSDVAAFAISLFSLW------AAGWEATPRQTYGFFRIEILGAL 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,724
Number of Sequences: 28952
Number of extensions: 334743
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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