Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00766
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   0.71 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   5.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.6  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 155  AQLKRKQDAEPH*IALMNSVFNEHESRRISD 247
            A +  + D+EP  +++M+ V+N  E RRI D
Sbjct: 1147 AIMSTRNDSEPTTLSVMHDVYNRDEIRRIVD 1177


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = +1

Query: 226  RISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEFQELMTV 405
            +I+AD+     KAV+ A    + D SN      A +  F+ +   N    +    +L  +
Sbjct: 1036 KIAADLVTASRKAVSAAEKDLSNDQSNNKSSRKALLITFKGVKNINAETLVQRLNDLDIL 1095

Query: 406  FQLLHWNG 429
            +  +  +G
Sbjct: 1096 YDAMPTSG 1103


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 465 AASIAVAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRFQHE-PKRSDT 328
           ++S     R+  P+P +  E +  L  F+HR +F + + E P   D+
Sbjct: 321 SSSNGTPDRANSPIPSQLSENKLTLESFEHRKSFDQVREEAPLEEDS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,899
Number of Sequences: 5004
Number of extensions: 32091
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)