Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00766
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0077 - 18866707-18867334,18867410-18867555 36 0.025
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 31 0.41
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 2.9
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 28 3.8
04_03_0895 + 20633554-20634480 28 5.0
02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832... 28 5.0
01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881... 27 6.6
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 27 6.6
11_01_0426 + 3271324-3271377,3272114-3272227,3272475-3272588,327... 27 8.8
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 27 8.8
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 35.5 bits (78), Expect = 0.025
Identities = 40/141 (28%), Positives = 61/141 (43%)
Frame = -1
Query: 498 VPEPSSALRLPAASIAVAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRFQHEPKRSDTSAG 319
+P SS L L +AS A A + Q+ P E L L+ + F+ + +A
Sbjct: 98 LPRTSSLLLLLSASSASAAKKQQQRPFELLRTASGTLQIKFSDDFLLAADDKVADLAAAA 157
Query: 318 VLVWVARVSGEGRACLRHRLLVKWSDIRRDSCSLNTLFINAI*CGSASCFRFSWAVLKTA 139
V R G+ + + LV +S RR S L+T I + +A + A T
Sbjct: 158 TNPPVLR--GDKKLEKEYEELVGYSKARRWSPKLDT--IQEVVAAAAGDTATAAATATTT 213
Query: 138 KARSTGERDVADVGRMGSRHR 76
+ S G R + +GR+GSR R
Sbjct: 214 RRSSKG-RGLPFLGRLGSRRR 233
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 224 HESRRISDHFTXXXXXXXXXPSPETRATHTRTPALVSLRLGSCWKRTK 367
H+ R + HF P++ AT P LVSLRLG+ + K
Sbjct: 117 HDYRSLQTHFYDVLQQGRAKKLPDSPATDIEEPELVSLRLGTSTSKCK 164
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 311 TRTP-ALVSLRLGSCWKRTKVGRCWN 385
T+ P + VSLR+G C R K GRC++
Sbjct: 513 TKLPFSFVSLRIGMCKDRLKKGRCFS 538
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 293 ETRATHTRTPALVSLRLGSCWKR 361
E TH P L++LRL CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234
>04_03_0895 + 20633554-20634480
Length = 308
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 501 LVPEPSSALRLPAASIAVAHRSQRPVPVEQLEY 403
L+ PS+A+ PAA +A RS RP+P EY
Sbjct: 145 LLLSPSAAMS-PAARLATIERSVRPMPEPAPEY 176
>02_02_0252 +
8323087-8323523,8323929-8324019,8324155-8324281,
8324469-8324623
Length = 269
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 132 RSTGERDVADVGRMGSRHRLVDDEGAARR 46
++TG D+A M ++H L+ EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269
>01_06_0736 -
31585840-31586459,31586545-31587070,31588051-31588149,
31589344-31589427,31589458-31589775,31589907-31590113
Length = 617
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 145 FQNCPTKAEARRRTTLNSINEQRIQRARISADIRPFHEKAVAEAR 279
F++ K A+ + N +NE + Q R+SAD P K A +R
Sbjct: 505 FKSSDAKKTAKSKLACNPLNEIQQQMVRLSAD-SPVENKRSARSR 548
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 166 AEARRRTTLNSINEQRIQRARISADIRPFHEKAVAEA 276
AEAR + ++ + R R SA+ R EKA AEA
Sbjct: 1206 AEARAKAERIALERITLARQRASAEAREKEEKATAEA 1242
>11_01_0426 +
3271324-3271377,3272114-3272227,3272475-3272588,
3272677-3272834,3273067-3273157,3273668-3273778
Length = 213
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 180 ASCFRFSWAVLKTAKARSTGERDVADVG 97
ASC W V++ KA S ERD A G
Sbjct: 48 ASCESIQWQVVELEKAISVAERDPAYYG 75
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 196 SINEQRIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFR 345
S N + R++AD RP ++ +S A D+S+ +P+AG+AA R
Sbjct: 137 SPNRSETGQERVAAD-RPASSESSGPVESSSADDSSSL-TEPAAGLAAVR 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,700
Number of Sequences: 37544
Number of extensions: 265686
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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