Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00766
(510 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-li... 179 6e-45
BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse) pr... 148 1e-35
AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens ... 148 1e-35
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r... 30 4.1
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r... 30 4.1
U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro... 30 5.4
X99325-1|CAA67700.1| 426|Homo sapiens Ste20-like kinase protein. 29 7.1
>BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-like
protein.
Length = 337
Score = 179 bits (435), Expect = 6e-45
Identities = 92/154 (59%), Positives = 111/154 (72%), Gaps = 4/154 (2%)
Frame = +1
Query: 1 ALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARR 180
ALQEFWQ+K LV+YE VP+ PPYVCYVTLPGG+CFGSFQ CPTKAEARR
Sbjct: 103 ALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTKAEARR 162
Query: 181 RTT----LNSINEQRIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRF 348
+NS+ + R RI+ + F EK+V+EA ASF G+ +P+ GI AFRF
Sbjct: 163 SAAKIALMNSVFNEHPSR-RITDE---FIEKSVSEALASFNGNREEA-DNPNTGIGAFRF 217
Query: 349 MLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRD 450
MLE+NKG++MLEFQELMTVFQLLHWNGSL+AMR+
Sbjct: 218 MLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRE 251
Score = 39.9 bits (89), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 450 RQCSRQEVVAHYSARALDD 506
RQCSRQEV+AHYS RALDD
Sbjct: 252 RQCSRQEVLAHYSHRALDD 270
>BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse)
protein.
Length = 282
Score = 148 bits (359), Expect = 1e-35
Identities = 72/149 (48%), Positives = 97/149 (65%)
Frame = +1
Query: 4 LQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRR 183
LQEFW+ K +V+YES+PA PP+V YVTLPGG+CFG+FQ C ++AEARR
Sbjct: 34 LQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRD 93
Query: 184 TTLNSINEQRIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEAN 363
++ + F ++V EA AS +G T + DPS + A+ +MLE+N
Sbjct: 94 AAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG-TLDDADDPSTSVGAYHYMLESN 152
Query: 364 KGRTMLEFQELMTVFQLLHWNGSLRAMRD 450
G+TMLEFQELMT+FQLLHWNGSL+A+R+
Sbjct: 153 MGKTMLEFQELMTIFQLLHWNGSLKALRE 181
>AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens
cDNA FLJ25534 fis, clone CBR08513. ).
Length = 282
Score = 148 bits (359), Expect = 1e-35
Identities = 72/149 (48%), Positives = 97/149 (65%)
Frame = +1
Query: 4 LQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRR 183
LQEFW+ K +V+YES+PA PP+V YVTLPGG+CFG+FQ C ++AEARR
Sbjct: 34 LQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRD 93
Query: 184 TTLNSINEQRIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEAN 363
++ + F ++V EA AS +G T + DPS + A+ +MLE+N
Sbjct: 94 AAKVALINSLFNELPSRRITKEFIMESVQEAVASTSG-TLDDADDPSTSVGAYHYMLESN 152
Query: 364 KGRTMLEFQELMTVFQLLHWNGSLRAMRD 450
G+TMLEFQELMT+FQLLHWNGSL+A+R+
Sbjct: 153 MGKTMLEFQELMTIFQLLHWNGSLKALRE 181
>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 70 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA---EARRRTTLNSINEQRIQRARISAD 240
Y P+A P VC+ + P G FGS Q PT+A +R L + ++++ R+ S D
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNSTD 3530
Query: 241 IR 246
I+
Sbjct: 3531 IQ 3532
>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 70 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA---EARRRTTLNSINEQRIQRARISAD 240
Y P+A P VC+ + P G FGS Q PT+A +R L + ++++ R+ S D
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNSTD 3530
Query: 241 IR 246
I+
Sbjct: 3531 IQ 3532
>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
Length = 3801
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 70 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA 168
Y P+A P VC+ + P G FGS Q PT+A
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRA 3503
>X99325-1|CAA67700.1| 426|Homo sapiens Ste20-like kinase protein.
Length = 426
Score = 29.5 bits (63), Expect = 7.1
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -1
Query: 495 PEPSSALRLPAASIAVAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRFQHEPKRSDTSAGV 316
P P S L A H SQ+P + + R Q L RP F + + K+S S G
Sbjct: 327 PSPHSKLHKGTA----LHSSQKPADAVKRQPRSQCLSTLVRPVFGELKEKHKQSGGSVGA 382
Query: 315 L 313
L
Sbjct: 383 L 383
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,753,754
Number of Sequences: 237096
Number of extensions: 1347564
Number of successful extensions: 3887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3881
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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