Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00766
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    29   1.5  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    29   1.5  
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 149 KTAQLKRKQDAEPH*IALMNSVFNEHESRRISDHFTXXXXXXXXXPSPETRATHTRTPA- 325
           K  QLK+K++   +   L NS  +   +R + DH           P+ E+ +T  R PA 
Sbjct: 268 KLDQLKQKEERNANLAKLHNSAKSPTRARLMQDHAPNKAASRKIFPTAESTSTPGRGPAK 327

Query: 326 --LVSLRLGSCWKRT 364
              V + +GS  ++T
Sbjct: 328 KGKVEILIGSDGQKT 342


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 149 KTAQLKRKQDAEPH*IALMNSVFNEHESRRISDHFTXXXXXXXXXPSPETRATHTRTPA- 325
           K  QLK+K++   +   L NS  +   +R + DH           P+ E+ +T  R PA 
Sbjct: 268 KLDQLKQKEERNANLAKLHNSAKSPTRARLMQDHAPNKAASRKIFPTAESTSTPGRGPAK 327

Query: 326 --LVSLRLGSCWKRT 364
              V + +GS  ++T
Sbjct: 328 KGKVEILIGSDGQKT 342


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 59  PSSSTSLCRLPIRPTSATSRSPVERALAVFKTAQLKRKQDAEP 187
           P  S  L RL +  + A S+ P  R  A     +LKR+QD +P
Sbjct: 185 PQKSFFLLRLSL--SYALSQEPHSRPTATLAARRLKRRQDTQP 225


>AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical
           protein Y37F4.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 365 LFASSMNLNAAIPALGSWCGLLVSPAKDARASA 267
           +  SS+NL++ +P  GSW G   + + D  A+A
Sbjct: 134 IMGSSLNLDSMLPIAGSWMGTQKTRSIDLVATA 166


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 61   LVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRRTTLNSINEQR 213
            +++Y  + AA    +C + L G +CF  ++N P K  A   T   +I E R
Sbjct: 2127 VILYAILLAASIFLLCVICLIGFSCFCYYRNHP-KDRAHTPTNTTTITEPR 2176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,915
Number of Sequences: 27780
Number of extensions: 190475
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)