Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00766
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.60 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.60 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 476 YDFLPRALPSRIALSDPFQWSSWNTVISSWNSSI 375
           Y FL R   + I +S   QWSS +T+  +W   +
Sbjct: 479 YSFLERL--NLIFMSSSLQWSSTHTLDVAWRRKV 510


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 476 YDFLPRALPSRIALSDPFQWSSWNTVISSWNSSI 375
           Y FL R   + I +S   QWSS +T+  +W   +
Sbjct: 517 YSFLERL--NLIFMSSSLQWSSTHTLDVAWRRKV 548


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 EFQELMTVFQLLHWNGSLRAMR 447
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 EFQELMTVFQLLHWNGSLRAMR 447
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 EFQELMTVFQLLHWNGSLRAMR 447
           +FQ+    FQ+LH   +LR +R
Sbjct: 188 QFQDFSESFQILHAGRALRILR 209


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 386 NSSIVRPLFASSMNLN 339
           NSSI    F S+ NLN
Sbjct: 12  NSSITETYFVSAYNLN 27


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 379 LEFQELMTVFQLLHWNGSLRAMRDGNARGRKS 474
           LE ++ MTVFQ     GSL  + + N +  +S
Sbjct: 653 LEGKQQMTVFQRTLMVGSLGKLTETNPKLARS 684


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 432 RPVPVEQLEYRHQLLEFQH 376
           +P+  EQ E  H+L+ FQ+
Sbjct: 329 KPISPEQEELIHRLVYFQN 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,659
Number of Sequences: 438
Number of extensions: 2393
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)