Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00766
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    29   2.4  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    28   3.2  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    28   3.2  
At5g15060.1 68418.m01765 hypothetical protein                          27   5.5  
At1g02990.2 68414.m00269 expressed protein similar to mature-par...    27   7.3  
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li...    27   9.7  
At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative / gluta...    27   9.7  

>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 76  SVPAAHPPYVCYVTLPGGACFGSFQNCPTK 165
           SV  +HP +  Y+ L  GAC G    C  K
Sbjct: 524 SVHESHPNHPIYINLTKGACMGCSNACSRK 553


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 211 RIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRF 348
           RI++ R   D  P++ K   + + ++ GD    ++DPSA  +A  F
Sbjct: 308 RIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGF 353


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 211 RIQRARISADIRPFHEKAVAEARASFAGDTSNPHQDPSAGIAAFRF 348
           RI++ R   D  P++ K   + + ++ GD    ++DPSA  +A  F
Sbjct: 308 RIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGF 353


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 211 RIQRARISADIRPFHEKAVAE----ARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTM 378
           R Q A ++A++R   ++  A       ASF    +N   DPS+ +  FR  L AN     
Sbjct: 87  RTQIALVTAELRRTRDQITAAFFNPTAASFFNSAANNFLDPSSAVNPFR-NLTANNDDGT 145

Query: 379 LEF 387
           +EF
Sbjct: 146 IEF 148


>At1g02990.2 68414.m00269 expressed protein similar to
            mature-parasite-infected erythrocyte surface antigen
            (GI:160409) {Plasmodium falciparum}
          Length = 1238

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -2

Query: 407  NTVISSWNSSIVRPLFASSMNLNAAIPALGSWCGLLVSPAKDARASATAFS*NG 246
            N VISS N+S +  L A S N+N A+ A  S    +   A   ++  T +S NG
Sbjct: 1156 NHVISSGNNSSLSQLLAFSKNVNYAMEA--SRKAQIALAAAKGKSFETRYSSNG 1207


>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
           protein [Nicotiana tabacum] GI:1064931, A-type cyclin
           [Catharanthus roseus] GI:2190259; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 327

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 444 HRSQRPVPVEQLEYRHQLLEFQ 379
           H  Q   PVE  E RH+LL FQ
Sbjct: 13  HNPQDASPVEWAEIRHKLLAFQ 34


>At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative /
           glutaminyl-tRNA synthetase, putative / GlnRS, putative
           similar to tRNA-glutamine synthetase GI:2995454 from
           [Lupinus luteus]
          Length = 795

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -1

Query: 363 VRFQHEPKRSDTSAGVLVWVARVS-GEGRACLRHRLLVKWSDIRRDSCSLNTLFINAI*C 187
           +  +++P++     GVL WVA  S GE    +  RL  K  +   +   LN  ++  I  
Sbjct: 677 IHAEYDPEKKSKPKGVLHWVAESSPGEEPIKVEVRLFEKLFN-SENPAELNDAWLTDINP 735

Query: 186 GSASCFRFSWAVLKTAKARSTGER 115
            S      ++AV  T K  + G+R
Sbjct: 736 NSKMVISGAYAV-STLKDAAVGDR 758


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,840
Number of Sequences: 28952
Number of extensions: 181570
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)