Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00765
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 111 1e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 89 8e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 74 2e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 4e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 6e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 4e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 53 4e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 5e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 52 6e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 9e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 51 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 6e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 8e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 47 2e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 7e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 44 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 43 4e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 43 5e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 38 0.001
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 38 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.011
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.032
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.032
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.2
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 27 3.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 6.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 111 bits (266), Expect = 1e-25
Identities = 50/79 (63%), Positives = 61/79 (77%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S +RNTCV+GG P+ Q
Sbjct: 220 KSSRIRNTCVYGGVPRGPQ 238
Score = 99.1 bits (236), Expect = 6e-22
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLL 511
K +G++ PTPIQ Q WP+AMSG++++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 88.6 bits (210), Expect = 8e-19
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVAKTGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+R C +GGAP ++Q
Sbjct: 516 KLLNIRACCAYGGAPIKDQ 534
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLL 511
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 74.1 bits (174), Expect = 2e-14
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAA 669
K+ IG+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 670 DFGHTSYVRNTCVFGGAPKREQA 738
F R V GG EQ+
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQS 369
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +2
Query: 335 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLI 260
Query: 679 HTSYVRNTCVFGGAPKREQA 738
+ ++ V+GGAPK EQA
Sbjct: 261 QGTNLKAVVVYGGAPKSEQA 280
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 496
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 497 GKNLL 511
G++++
Sbjct: 202 GRDVV 206
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.3 bits (137), Expect = 6e-10
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+ +R+ + GG EQ
Sbjct: 164 KGTDLRSVAIVGGVSLEEQ 182
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ + + + G+K PTPIQ + P+ + G++++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 56.4 bits (130), Expect = 4e-09
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 675
++ IG+A+TGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAI 137
Query: 676 GHTSYVRNTCVFGGAPKREQA 738
G + VR+ + GG QA
Sbjct: 138 GGSIGVRSVVIVGGMDMVTQA 158
Score = 31.5 bits (68), Expect = 0.13
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 672
++ +G AKTGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 673 FGHTSYVRNTCVFGGAPKREQA 738
+ V GGA +R +A
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEA 205
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.8 bits (121), Expect = 5e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 681
A+TGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 682 TSYVRNTCVFGGAPKREQ 735
+ ++ + V GG K+ +
Sbjct: 245 SHWIVSCNVIGGEKKKSE 262
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = +1
Query: 508 IGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 687
IG AKTGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 48 IGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 688 YVRNTCVFGG 717
+++ + GG
Sbjct: 103 NLKHALIVGG 112
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.0 bits (119), Expect = 9e-08
Identities = 30/79 (37%), Positives = 44/79 (55%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G AKTGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+ GG +E+
Sbjct: 136 RLHSFSAGLIIGGNNYKEE 154
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 663
K+ + A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L+A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 6e-07
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 639
++ + A+TGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 640 LAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
L QI + + F + S+VR V+GGA R Q
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.8 bits (111), Expect = 8e-07
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 672
K+ + A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 33.1 bits (72), Expect = 0.042
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N +++ V G+K+ TP+QA P+ + K+L+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K+ +G A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 679 HTSYVRNTCVFGG 717
+ + GG
Sbjct: 355 SFTDIMVCLCIGG 367
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N + +G+ +G++ PT IQ + P+A+ GK+++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 696
AKTG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 697 NTCVFGGAPKREQ 735
+ GG K +
Sbjct: 143 VSYAIGGNSKMRE 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.6 bits (103), Expect = 7e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 502 EFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADF 675
+ IG A TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 676 GHTSYVRNTCVFGGAPKREQ 735
+ +R + GG ++Q
Sbjct: 216 KPSPNIRVMSITGGLAVQKQ 235
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/97 (26%), Positives = 45/97 (46%)
Frame = +1
Query: 442 GLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G +R + + ++ + AK G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
L PTRELA Q QV G V+ GG R+
Sbjct: 118 LVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA+SG+++LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
++ + A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 43.2 bits (97), Expect = 4e-05
Identities = 29/97 (29%), Positives = 47/97 (48%)
Frame = +1
Query: 442 GLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G +R A + ++ + A++G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
LAPTRELAQQIQ+V G V GG R+
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
+ IG +++G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG 208
Query: 679 HTSYVR 696
+ V+
Sbjct: 209 KYTEVK 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
D+G + + S + + + AK+G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 616 -LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 717
LVL TRELA QI+ A F + VR +GG
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 442 GLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G + A S + ++ I A++G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 622 LAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 714
L+PTRELA QIQ V G H + + C+ G
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Score = 31.9 bits (69), Expect = 0.098
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 506 LLA 514
++A
Sbjct: 61 VIA 63
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 654
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.032
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 508 IGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 654
I V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.032
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 508 IGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 654
I V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 245 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 72
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 71 HDYFSDLVEDVYLNYGFFLTQG 6
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 314 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
P+E + + KH++ ++ V +Q +E+ F + ++ VK G + W
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG----ANLVICQWGFDD 310
Query: 494 SGKNLLA*PKRVPAKRW 544
+LL +PA RW
Sbjct: 311 EANHLLL-QNNLPAVRW 326
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 454 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 329
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 314 PYEVEEYRNKHEVTVS 361
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 648
K+ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,686
Number of Sequences: 5004
Number of extensions: 67501
Number of successful extensions: 237
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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