Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00765
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 114 5e-26
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 108 4e-24
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 108 4e-24
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 88 5e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 88 7e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 85 5e-17
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 82 3e-16
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 78 5e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 77 1e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 72 5e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 59 3e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 59 3e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 58 5e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 58 6e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 58 6e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 56 2e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 56 2e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 56 2e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 53 2e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 53 2e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 3e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 52 4e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 52 5e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 51 7e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 51 7e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 49 4e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 48 5e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 9e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 48 9e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 1e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 47 1e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 45 6e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 6e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 6e-05
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 43 2e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 43 2e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 43 2e-04
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 39 0.003
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 39 0.003
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 39 0.004
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 38 0.005
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 38 0.005
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 38 0.005
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 38 0.009
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 34 0.086
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 34 0.11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 34 0.11
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.26
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.26
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 0.46
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 31 0.60
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 31 1.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 31 1.1
At2g25460.1 68415.m03049 expressed protein 30 1.4
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 29 2.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.6
At4g27510.1 68417.m03951 expressed protein ; expression support... 28 7.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.4
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.4
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.4
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.8
At5g25520.2 68418.m03037 transcription elongation factor-related... 27 9.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 114 bits (275), Expect = 5e-26
Identities = 50/79 (63%), Positives = 64/79 (81%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S ++ TC++GG PK Q
Sbjct: 197 SSSKIKTTCIYGGVPKGPQ 215
Score = 102 bits (244), Expect = 3e-22
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +2
Query: 239 RLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 418
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
V + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 108 bits (259), Expect = 4e-24
Identities = 48/79 (60%), Positives = 64/79 (81%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 679 HTSYVRNTCVFGGAPKREQ 735
S VR+TC++GGAPK Q
Sbjct: 263 LRSGVRSTCIYGGAPKGPQ 281
Score = 95.5 bits (227), Expect = 3e-20
Identities = 39/92 (42%), Positives = 62/92 (67%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 108 bits (259), Expect = 4e-24
Identities = 48/79 (60%), Positives = 64/79 (81%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 679 HTSYVRNTCVFGGAPKREQ 735
S VR+TC++GGAPK Q
Sbjct: 263 LRSGVRSTCIYGGAPKGPQ 281
Score = 95.5 bits (227), Expect = 3e-20
Identities = 39/92 (42%), Positives = 62/92 (67%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+R V+GG+ +Q
Sbjct: 627 KPLGIRCVPVYGGSGVAQQ 645
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 87.8 bits (208), Expect = 7e-18
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+AKTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+R + V+GG K EQ
Sbjct: 326 KAYGLRVSAVYGGMSKHEQ 344
Score = 72.5 bits (170), Expect = 3e-13
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/79 (50%), Positives = 52/79 (65%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+ V+GG+ +Q
Sbjct: 494 KALGIICVPVYGGSGVAQQ 512
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S + TC++GGAPK Q
Sbjct: 255 RSSRISCTCLYGGAPKGPQ 273
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S + TC++GGAPK Q
Sbjct: 255 RSSRISCTCLYGGAPKGPQ 273
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S + TC++GGAPK Q
Sbjct: 255 RSSRISCTCLYGGAPKGPQ 273
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +AKTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S + TC++GGAPK Q
Sbjct: 532 RSSRISCTCLYGGAPKGPQ 550
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ G+ PTPIQAQ WPIA+ ++++A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+S + C++GGAPK Q
Sbjct: 326 KSSKISCACLYGGAPKGPQ 344
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V + G+ P+PIQAQ WPIAM ++++A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 415
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 669
++ IG+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 670 DFGHTSYVRNTCVFGGAPKREQ 735
F H R T + GG EQ
Sbjct: 411 KFAHYLGFRVTSIVGGQSIEEQ 432
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 332 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVA 666
++ IG+AKTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 667 ADFGHTSYVRNTCVFGGAPKREQ 735
+ G +++ CV+GG+ K Q
Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQ 234
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLL 511
G++L+
Sbjct: 150 DGRDLI 155
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.3 bits (147), Expect = 2e-10
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQP---PIRRGD 603
KD G+ L ++ IG+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 604 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQ 735
GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQ 222
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 424
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAA 669
++ IG+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 670 DF 675
F
Sbjct: 244 QF 245
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLL 511
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + A+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 664 AADFGHTSYVRNTCVFGGAPKREQ 735
A F + + V+ +GG P +Q
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQ 280
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 675
++ IG A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EF 198
Query: 676 GHTSYVRNT-CVFGGAPKREQ 735
++ +T C++GG P +Q
Sbjct: 199 RESAPSLDTICLYGGTPIGQQ 219
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 58.0 bits (134), Expect = 6e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + A+TGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 664 AADFGHTSYVRNTCVFGGAPKREQ 735
A F + + V+ +GG P +Q
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQ 267
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 263 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA 514
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 58.0 bits (134), Expect = 6e-09
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 609
K G+++ + L + ++ IG A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQ 735
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q
Sbjct: 192 QCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQ 231
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 664 AADFGHTSYVRNTCVFGGAPKREQ 735
A F + + V+ +GG P +Q
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQ 272
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 664 AADFGHTSYVRNTCVFGGAPKREQ 735
A F + + V+ +GG P +Q
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQ 272
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Frame = +1
Query: 427 RCKDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRR--- 597
+ K NG++ +S + +G A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 598 --GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 717
G P LVL PTRELA+Q+ +G + + + C++GG
Sbjct: 170 GYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGG 211
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAI-VHINNQPPIRRGDGP 609
K+ G Q + + K+ +G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 738
+V+ PTRELA Q + VA + + V GG +R +A
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEA 205
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQV 663
++ I AKTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 664 AADFGHTSYVRNTCVFGG 717
+ Y+ CV+GG
Sbjct: 200 IKE--SAPYLSTVCVYGG 215
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 687
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 688 YVRNTCVFGGAPKREQ 735
R+ V GG+ R Q
Sbjct: 217 RFRSILVSGGSRIRPQ 232
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 690
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 691 VRNTCVFGGAPKREQ 735
+ V GG K ++
Sbjct: 134 IVPGYVMGGEKKAKE 148
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG++ PT +QAQ P+ +SG+++L
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/96 (33%), Positives = 52/96 (54%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 609
CK+ G+++ + + ++ +G+A+TGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 717
ALV+ PTRELA Q+ + G +R + + GG
Sbjct: 128 FALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE ++ + K +G ++PTP+Q P ++G+++L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP- 609
KD G + + L K+ + AKTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 610 --IALVLAPTRELAQQ 651
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K + A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 670 DFGHTSYVRNTCVFGGAPKREQ 735
G + V GG P Q
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQ 229
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 311 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLLA 514
A++GK+LLA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K + A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 670 DFGHTSYVRNTCVFGGAPKREQ 735
G + V GG P Q
Sbjct: 71 MLGKGLPFKTALVVGGDPMSGQ 92
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/78 (33%), Positives = 47/78 (60%)
Frame = +1
Query: 502 EFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ + +A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGK 123
Query: 682 TSYVRNTCVFGGAPKREQ 735
+ +R + + GG +Q
Sbjct: 124 FTDLRVSLLVGGDSMEDQ 141
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE N V +K GYK PTPIQ + P+ +SG +++A
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 612
K+ G R + + + ++ +G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 613 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQA 738
LV+ PTRELA Q VA + H+ V V GG ++ +A
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEA 270
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG+ T IQA+ P M G+++L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGD--G 606
KD G + + L K+ + AKTG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 607 PI-ALVLAPTRELAQQ 651
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 654
K+ + AKTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 34.3 bits (75), Expect = 0.086
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLA 514
K+++A
Sbjct: 84 KDVVA 88
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 651
K+ + AKTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F++ +G++ G+K T +Q P+ + GK++LA
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILA 122
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.6 bits (108), Expect = 9e-06
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K+ + A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAE 111
Query: 670 DFGHT-SYVRNTCVFGG 717
F T V + + GG
Sbjct: 112 PFVSTLPNVNSVLLVGG 128
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/102 (28%), Positives = 50/102 (49%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 609
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
L+L PTRELA QI + + + ++ + GG REQ
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 46.8 bits (106), Expect = 1e-05
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHI-----NNQPPIR 594
C+ G + + L + K+ IG+A+TGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 595 RGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
R P A VL+PTRELA QI + G +R + GG + +Q
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQ 132
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = +1
Query: 454 TDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 633
TD S++ + + ++ +G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 634 RELAQQ 651
RELA Q
Sbjct: 153 RELAAQ 158
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +2
Query: 335 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLA 514
A
Sbjct: 180 ECFA 183
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 651
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
K+ + A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 606
+G+ + + L++ K+ + AKTG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 607 PIALVLAPTRELAQQI 654
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/99 (24%), Positives = 46/99 (46%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G +R + + ++ + AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
+++ PTRELA Q QV + G ++ GG ++
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/99 (24%), Positives = 46/99 (46%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G +R + + ++ + AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
+++ PTRELA Q QV + G ++ GG ++
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 606
+G+ + + L++ K+ + AKTG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 607 PIALVLAPTRELAQQI 654
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Frame = +1
Query: 496 WKEFIGVAKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 666
+K+ A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 667 ADFGHT-SYVRNTCVFGG 717
F T + V + + GG
Sbjct: 111 QPFVSTLANVNSVLLVGG 128
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + AK G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
++L PTRELA Q QV + ++ GG R+
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD 234
Score = 34.7 bits (76), Expect = 0.065
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + AK G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
++L PTRELA Q QV + ++ GG R+
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD 234
Score = 34.7 bits (76), Expect = 0.065
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVA 666
K I ++GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANC 471
Query: 667 ADFGHTSY-VRNTCVFGGAPKREQ 735
+ R+ V GG +R Q
Sbjct: 472 RSISKSGVPFRSMVVTGGFRQRTQ 495
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + AK G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
++L PTRELA Q QV + + GG R+
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRD 264
Score = 34.7 bits (76), Expect = 0.065
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 663
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Frame = +1
Query: 487 SYVWKEFIGVAKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 621
+Y K+ IG A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
+ PTRELA Q+ + + V+ + GG +Q
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQ 322
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K I A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +1
Query: 613 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVRE 151
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +1
Query: 613 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVRE 149
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +1
Query: 613 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
ALVLAPTRELAQQI++V G V+ GG RE
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 149
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
A+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKT--LAYILPAIVHINNQPPIRRGDGP 609
D G ++ L ++ I A++G+GKT +A + IV+I+++
Sbjct: 39 DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------ 92
Query: 610 IALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 714
LVL+P+RELA Q ++ G HT+ + C+ G
Sbjct: 93 -VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGG 127
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 612
D+G + + + + + I AK+G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 613 ALVLAPTRELAQQI 654
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 612
D+G + + + + + I AK+G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 613 ALVLAPTRELAQQI 654
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAIVHINN----QPPIRRG 600
+D+G R + + K+ I A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 601 DGP-----IALVLAPTRELAQQI 654
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 654
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 517 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 654
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ I A++G+GKT L ++ + AL+L+PTRELA Q ++ G
Sbjct: 73 RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIG 127
Query: 679 -HTSYVRNTCVFGGA 720
H + + C+ G +
Sbjct: 128 LHANIQAHACIGGNS 142
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/91 (28%), Positives = 42/91 (46%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 452 EPTPIQAQGWPIAMSGKNLLA*PKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/91 (28%), Positives = 42/91 (46%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 452 EPTPIQAQGWPIAMSGKNLLA*PKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 320
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 201 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 85
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 643 LTLW*APRPKQSDHHLSE*AVGYLCAQWLARCR-PTFCRNPFWLR 512
LTL+ K + HL L W+ +C FC NP W+R
Sbjct: 381 LTLFLIYLLKMTKTHLGAKKPSRLILSWITKCHFQMFCGNPMWIR 425
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 653 ICCANSLVGAKTKAIGPSPLRI 588
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At4g27510.1 68417.m03951 expressed protein ; expression supported
by MPSS
Length = 677
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 489 LCLERIYWRSQNGFR 533
+C+ER+YW+ N FR
Sbjct: 250 MCVERLYWKKGNAFR 264
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 82 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 228
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVAKTGSGKTLAYILPAI 564
CK NG+ ++ S +A SYV + +G A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,283
Number of Sequences: 28952
Number of extensions: 348512
Number of successful extensions: 1127
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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