Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00763
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 29 0.76
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.3
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 1.8
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 2.3
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 27 3.1
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 7.1
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 7.1
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.4
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 25 9.4
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.4
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 496 KHEENLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWK--RHCHNSPSRTGTFLS 669
+ E+L+ C E + +I R L +C G LP + +H H++P R+ S
Sbjct: 387 ERSEDLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISS 446
Query: 670 RS 675
+S
Sbjct: 447 KS 448
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 FCCPREQILR--PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 699
F CP L P++L C GTVC R+ ++S S SR +H P
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 250
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 438 VYSXXXXXXXXXXXITGPRQTRGESDTKSVYREYNREFLLPKGTNP-EAIKSSLSRDGVL 614
+YS +T QT K VY R+ LLP P E++ SR +
Sbjct: 236 IYSIAFHPDSSLLTVTSSTQTVHIFRLKEVYSNLERQGLLPSSPPPKESLLRRSSRSLIG 295
Query: 615 TVEAPLPQ 638
TV LPQ
Sbjct: 296 TVGGYLPQ 303
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +2
Query: 116 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFNQNS*TEKATISSR 295
++ D G + + LG + ++ +S+R DAEM + E++ + + T S+
Sbjct: 42 ELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNA 100
Query: 296 AQLARRHLHSI 328
Q ++ SI
Sbjct: 101 EQHLQKIKESI 111
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 131 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFNQNS*TEKATISSRAQ 301
G++ + L + +++ S + FDAE K+E E+ + +S + R Q
Sbjct: 507 GIESRLTSVLSECNMLRETASEEKNAFDAESDKLERELQQLKLSSHNSMLQLDQRIQ 563
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 610 CLPWKRHCHNSPSRTGTFLSRSTERSHH 693
CL W RH +S SR+G ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 364 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 480
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 625 RHCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 747
R CHNS +R+ F+S + V+ Y+ +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 409 TLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 534
T L+ V + T ++ KT+D +LL+ +E I N C E
Sbjct: 95 TRSLQLSVKKTTRQQ---KTLDGQLLILKDNERTTISNRCAE 133
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 142 KYPHQAWRFFGYRY 183
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,614
Number of Sequences: 5004
Number of extensions: 63604
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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