Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00763
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 35 0.085
03_02_0485 - 8808139-8808618 33 0.20
03_02_0483 - 8804021-8804485 33 0.20
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 1.4
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 30 2.4
07_03_1498 + 26995209-26995752,26995945-26996513 29 5.6
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 7.4
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 9.7
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490 28 9.7
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264 28 9.7
>03_02_0484 + 8805053-8805538
Length = 161
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +3
Query: 480 ITGPRQTRGESDTKSVYR------EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 629
I+G R E T +R ++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 91 ISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 145
>03_02_0485 - 8808139-8808618
Length = 159
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 534 EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 629
++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 113 KFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 143
>03_02_0483 - 8804021-8804485
Length = 154
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 534 EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 629
++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 108 KFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 138
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 186 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 28
S+ I+ S ++ ++L+P A IC + V++KQ+LK TF W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 400 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEE 507
D K +++RFD+ + EE+ V D+ L++ +H++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKK 175
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 337 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 453
++L P HW + P + + G G+ RF + TP E
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPME 283
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 122 ADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFNQNS*TEKA-TISSRA 298
A S + ++P+ L D S +E S++R DA K EE+ + ++ T + A
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQRPGRRRRKRKQRGPTRPTIA 111
Query: 299 QLARRHLHSIVTADSLPSPVTGIA 370
L ++ A+ SP T ++
Sbjct: 112 LLTEEAKQRLLRAEGQTSPGTTVS 135
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.9 bits (59), Expect = 9.7
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Frame = +1
Query: 322 QHSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTP--EEIVVKTVDNKLLVHA 495
+ S SR + SL+S D+ + + R + TP + + K H+
Sbjct: 868 EKSRSRSSHRQTQSGSLDSDSTSDQHRSRERRSRHKIRSGTPGSDSSIEHHRSKKRKSHS 927
Query: 496 KHEENLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWK-RHCHNSPSRTGTFLSR 672
KH R+ +++ + + + R R P T + H S SR + R
Sbjct: 928 KHRTRRSRSPYADSSDSQYTKRKHREKRHHRTRNPDTDSSDHEYEERHKSSSRRSSDKDR 987
Query: 673 STERSHHSPR 702
S RS H R
Sbjct: 988 SRRRSRHHKR 997
>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
Length = 309
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 659 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 564
VPV DG +LW WR +G+ + G G CS
Sbjct: 145 VPVADGGVSTDLWAWRKYGQKPIKGSPYPRGYYKCS 180
>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
Length = 336
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 659 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 564
VPV DG +LW WR +G+ + G G CS
Sbjct: 156 VPVADGGVSSDLWAWRKYGQKPIKGSPYPRGYYKCS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,375,755
Number of Sequences: 37544
Number of extensions: 402078
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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