Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00763
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 640 SCGNGASTVSTPSRDSEDL 584
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 634 HNSPSRTGTFLSRSTERSHHSP 699
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 406 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 534
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 406 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 534
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 406 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTE 534
           K  K   DV    PE++ +   DNKL  +A +  N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNAGY--NVIEQVRTK 114


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 480 FVVDSLNNDLF 448
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +1

Query: 583 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 699
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 141 LLRPLSAIFHVICRVEIVETKQTLKRSRVNTF 46
           L  PL+ I H  C   I  T+   + +R N F
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNF 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,916
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)