Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00763
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19340.1 68418.m02305 expressed protein                             31   0.66 
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    31   0.87 
At5g54730.1 68418.m06815 expressed protein                             29   4.6  
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /...    29   4.6  
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    29   4.6  
At5g45270.1 68418.m05556 WRKY family transcription factor contai...    28   6.1  
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ...    28   6.1  
At1g26440.1 68414.m03223 expressed protein similar to SP|Q41706 ...    28   6.1  

>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 33/97 (34%), Positives = 42/97 (43%)
 Frame = +1

Query: 409 TLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEENLIRNLCTENTTGSFCCPREQILRPLS 588
           TLK + +V Q   EE   K V+ +  VH K +EN   N    N  GS+    +   RP  
Sbjct: 99  TLKPKVEVQQ---EEEDHKVVNEEGFVHNKEQENNNNNNNNNNNRGSWFLDDDPSPRP-- 153

Query: 589 LRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 699
            +C  TV   WK        RT T  + ST  S  SP
Sbjct: 154 PKC--TVL--WKELLRLKKQRTTTTTTASTRVSSLSP 186


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 146 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF-NQNS*TEKATISSRAQLAR 310
           IP++  D   +   F S+R   + +++ M++E +KF  Q+    K  +  +AQL R
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKFWKQHPAIVKTELLIQAQLTR 313


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 661 MFLSVMASCGNGASTVSTPSRDSEDLMASGFVPLGNKNSLLYSLYTDFVSDSPRV 497
           +F S + S    + +V+  +RDS   +ASG   LG+K     + Y   V  +P +
Sbjct: 253 IFTSEIVSLSTSSPSVAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPNPYI 307


>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 498 TRGESDTKSVYREYNREFLLPKGTNPEAI-KSSLSRDGVLTVEAPLPQ 638
           TR   D      E+NRE LLPK   PE   K  LS D  +T+    PQ
Sbjct: 220 TRSIGDAYLKRAEFNREPLLPKFRLPEHFTKPILSADPSVTITRLSPQ 267


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 534 EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 629
           +++R+F LP+    + +K+S+  +GVLTV  P
Sbjct: 109 QFSRKFKLPENVKMDQVKASM-ENGVLTVTVP 139


>At5g45270.1 68418.m05556 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 114

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 653 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 564
           + +G+LW WR +G+  + G R   G   C+
Sbjct: 31  IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60


>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 539

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 388 QDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNKLLVHAKHEENLIRNLCTENTTG 546
           +D  DG+ L+   DV +   E E   K +++K ++H  HEE+ +R    +N TG
Sbjct: 218 KDVWDGEELE---DVPEEEEEIEDPYKVINDKEIIHFSHEEHSLRLGGDDNVTG 268


>At1g26440.1 68414.m03223 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 377

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -3

Query: 582 WPQDLFPWATKTPCCILCTQISYQILLVFGVDQ*FVVDSLNNDLFGSILADIKAKLESLA 403
           WP  LF  A  T    L   ++   +L  GV    V   L + +  S  ADIKAKL  L+
Sbjct: 92  WPSVLFAMAGTTVNYFLDNGLNRADILFSGVGCFMVAVCLGSAVHSSNSADIKAKLGKLS 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,006
Number of Sequences: 28952
Number of extensions: 331135
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)