Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00762
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 146 2e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.0
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 5.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.6
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 7.3
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 9.7
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.7
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.7
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 146 bits (354), Expect = 2e-36
Identities = 67/106 (63%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
Frame = +3
Query: 201 KNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 380
K + E L + +I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106
Query: 381 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGN-HT 515
+GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G+ HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 142 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64
Score = 32.3 bits (70), Expect = 0.048
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 509 PHTVPCKVTGKCGS 550
PHTVP KV+GKCGS
Sbjct: 150 PHTVPVKVSGKCGS 163
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 139 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 14
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 467 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 333
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 509 VSDLVTPVTSSNW*NRQLSKDNSASN 432
VS++VTP T++NW N S +S S+
Sbjct: 193 VSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 180 RPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDE 296
R +++NR+T + LV T +FF P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 9.7
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 425
E F G + E + ++P G TRF V D NG I G+ + E A
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437
Query: 426 TAIRGAIILAKLSVLPV 476
++ G L S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 326 LFLYRHDL*NLIIQGRAEEEINDLNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 153
L +Y L NL+ QG+A E +N + + + I S +RP + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 497 VTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFL 318
VTP +SS+ + ++ +A + A+ HT N +V C+ + C+FL
Sbjct: 255 VTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFL 313
Query: 317 Y 315
Y
Sbjct: 314 Y 314
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 431 GSGDFLAALHTQTNMTVVVANGNKCLETCA 342
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,928
Number of Sequences: 5004
Number of extensions: 42773
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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