Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00762
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 5e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 6e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 1e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 1e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 1e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 1e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 7e-06
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.6
At3g01450.1 68416.m00069 expressed protein 28 4.7
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 8.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (389), Expect = 5e-40
Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 60.5 bits (140), Expect = 7e-10
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 161 KPHTVPCKVTGKCGS 175
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (388), Expect = 6e-40
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 52.8 bits (121), Expect = 1e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++WVPVTKLGRLV G I ++E IYL SLP+KE
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 170 KPHTVPCKVTGKCGS 184
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 169 KPHTVPCKVTGKCGS 183
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 169 KPHTVPCKVTGKCGS 183
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 169 KPHTVPCKVTGKCGS 183
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (386), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGS 550
KPHTVPCKVTGKCGS
Sbjct: 169 KPHTVPCKVTGKCGS 183
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 7e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 291 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 470
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 471 PV 476
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 499 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 320
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 319 CTGMIFRTSSFR 284
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 357 AFVAIGDNNGHIGLGVKCSKE 419
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 502 ILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVC 323
+LL Q L++ + A + VA + H +P + P L P N R+R A C
Sbjct: 165 LLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKASTC 223
Query: 322 F 320
F
Sbjct: 224 F 224
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 506 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 405
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,601,600
Number of Sequences: 28952
Number of extensions: 241238
Number of successful extensions: 652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -