Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00761
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   1.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   1.9  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   10.0 
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   10.0 
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   10.0 

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 239 FAISSSVRVPALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTA 105
           F ISSS+R P + H   L   G  +   +  +CS GDL  + + A
Sbjct: 406 FCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAA 450


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNP 176
           VP+  +   YG + SY YE  I + T+  +  Y  +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 636 HYLLFTVTWIVLFLGV*LGWIVTG 565
           +Y+  T++WI+ F+G+ LG  V G
Sbjct: 417 NYIGITISWIITFIGIALGPAVFG 440


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 87  MYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHTGP 263
           M+ G   + +    ++  T VG+E  FT      +SLV  G       D + + +H  P
Sbjct: 1   MFVGSPSAIEKPLSLSSKTKVGDETEFTEDALRGSSLVPTG---ILNGDDECHALHMSP 56


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 155 LAYVCSIGDLILVFVTAIITIIHF 84
           + ++ +IGD   +F T I+T + F
Sbjct: 472 IGFITAIGDFAWIFTTIIVTTVAF 495


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 245 HRPHWADKTGYHAYGDHLPTPPPVP 319
           H   +  K GY  YG+ + TP  VP
Sbjct: 46  HCRQYCTKPGYDIYGNSVQTPSNVP 70


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 254 VDGVNFAISSSV-RVPALFHQACLFCIGI 171
           V G  F + SS+  +PA++ +  L+C+GI
Sbjct: 352 VSGTFFGVVSSLFLLPAMWKRRSLYCVGI 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,567
Number of Sequences: 5004
Number of extensions: 46825
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)