Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00761
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085) 29 4.5
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_26929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 28 7.9
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 7.9
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 523 KKELEGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 407
+K + G+ +GGV +GG+ +C+G V +R+ G+
Sbjct: 51 EKRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGV 89
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 523 KKELEGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 407
+K +EG+ +GGV +GG+ + +G V +R+ G+
Sbjct: 99 EKRIEGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGV 137
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 69 PVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVY 245
P + E+YY D E A G G++G P E + +Y+Y GAD + Y
Sbjct: 1078 PYQEGEVYYYDEQGNIVEGYDA-GQVYGQDGQLLAPAVEATEAYGEEYYTYEGADQQAY 1135
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 138 HRRFDTRICNCHYHHNTFHS 79
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
Length = 646
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 669 VSRKICIRSFKHYLL--FTVTWIVLFLGV*LG 580
VS KI R K Y + + + WIV FLG LG
Sbjct: 497 VSHKILCRKLKSYDINPYVINWIVSFLGTVLG 528
>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 108 SYKYEYQIADGTHVGEEGYFTNPNTE 185
S ++E +I DG G++G F + NTE
Sbjct: 43 STQWEVKIQDGARTGQKGIFRDDNTE 68
>SB_26929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 147 VGEEGYF-TNPNTEEASLVKKGWYSYTGADGKVYTVHTGPTRLATMLT 287
VG++G F +N + +L KKG + +G +G + G RLA LT
Sbjct: 158 VGKKGNFASNQRQKFRTLRKKGKINASGKEGNIKIKIAGDYRLAVQLT 205
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +3
Query: 93 YGDNGSYK-----YEYQIADGTHVGEEGYFTNPNTEEASLVK-KGWYSYTGADGKVYTVH 254
Y NG +K +EY ++G+++ + TN NT++ SL K + +YT T +
Sbjct: 742 YRLNGQFKEYIVLFEYMASNGSNIIKSEKVTNINTQDLSLTPLKKFTNYTLTLRSSNTQY 801
Query: 255 TGPT 266
TG T
Sbjct: 802 TGAT 805
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 212 PALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTAIITIIHFIL 78
PA L C+ I + + + I +I++F+T I+ II I+
Sbjct: 316 PATSDAQLLLCLHIYIITIIITIIIIITIIIIFITTILIIITIII 360
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 117 YEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGA 230
Y + +A G+ +G T P+T+ + GWY+YT A
Sbjct: 3913 YAWVVAQGS-TSTQG--TGPSTDHTTGTANGWYAYTDA 3947
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 209 LVLLHWS*WQSLHRPHWADKTGYHAYGDHLPT 304
++LLHW+ W SL +AD T +A+ + T
Sbjct: 245 MMLLHWANWFSLDELKFADDTWKYAFPKFVTT 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,973,676
Number of Sequences: 59808
Number of extensions: 389671
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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