Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00761
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    39   5e-05
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   4.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 260 ADKTGYHAYGDHLPTPPPVPAAIQAALD 343
           AD+ G+   G H+PT PP+P  IQ AL+
Sbjct: 91  ADENGFQVQGSHIPTAPPIPPEIQRALE 118


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 66  VPVIKNEMYYGDNGSYKYEY 125
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 175 PIQKRQAW*K--RAGTLTLELMAKFTPSTLGRQDWLPCLRG 291
           PI+  + W     +GT TL+         L    W+P +RG
Sbjct: 442 PIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSIRG 482


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 78  KNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 173
           KNE   G   +YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,597
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)