Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00761
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 31 0.53
At5g04400.1 68418.m00432 no apical meristem (NAM) family protein... 29 2.8
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t... 29 3.8
At1g67140.1 68414.m07638 expressed protein 29 3.8
At1g21670.1 68414.m02712 expressed protein similar to TolB prote... 29 3.8
At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)... 28 5.0
At1g22080.1 68414.m02761 hypothetical protein 28 5.0
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 8.7
At2g07706.1 68415.m00956 expressed protein 27 8.7
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 27 8.7
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 234 HQLQCKSTSPFSPGLPLLYWD 172
H+ QC +T P SP LP+ +W+
Sbjct: 348 HKFQCVATMPVSPELPVTFWE 368
>At5g04400.1 68418.m00432 no apical meristem (NAM) family protein
ontains Pfam PF02365: No apical meristem (NAM) protein
Length = 395
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 168 TNPNTEEASLVKKGWYSYTGADGKVYTVHTGPTRLATMLT 287
T T + K+G++ TG DGK+ G + TM T
Sbjct: 107 TRTGTSMSRATKQGYWKVTGTDGKIRQGGDGKVTIGTMKT 146
>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
AMP-binding protein [gi:1617272] from Brassica napus;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA acyl-CoA synthetase-like protein
GI:20799730
Length = 727
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 156 EGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHT 257
+GY+ NP+T + L + GW++ TG G + H+
Sbjct: 555 KGYYKNPSTTKQVLNESGWFN-TGDTGWIAPHHS 587
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 275 SQSCRPSVDGVNFAISSSVRVPALFHQACLFCIG 174
+ S +P DG NFA S + A+F ACL +G
Sbjct: 1627 ASSQKPYTDGTNFAADSGFHLRAIF-GACLHMVG 1659
>At1g21670.1 68414.m02712 expressed protein similar to TolB protein
precursor (SP:P50601) {Pseudomonas aeruginosa}
Length = 703
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 120 EYQIADGTHVGEEGYFTNPNTEEASLVKK 206
E+++ DG + GYF +P+T SL+ K
Sbjct: 63 EHRLTDGKSINFNGYFASPSTALISLLPK 91
>At4g28030.1 68417.m04021 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 274
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 290 PRKHGSQSCRPSVDGVNFAISSSVRVPALFHQACL 186
P S C P++D F IS SV L+ ACL
Sbjct: 41 PVAASSHICAPAIDKSTFVISESVSEDELWAAACL 75
>At1g22080.1 68414.m02761 hypothetical protein
Length = 475
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 118 TSIKSPMEHT*ARKATSRIPIQKRQAW*KRAGTLTLELMAKFTP 249
+ + S MEH+ AR + +++P W + T+ L+A+ P
Sbjct: 408 SDVASKMEHSDARYSVTKVPTSMDTLWAQVIATMPYHLVAQAVP 451
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 251 PHWADKTGYHAYGDHLPTPPPVPA 322
P + GYHA +PTPPP+ A
Sbjct: 193 PPYDPYAGYHAPPVPMPTPPPIAA 216
>At2g07706.1 68415.m00956 expressed protein
Length = 306
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -2
Query: 317 VREEEWVNGPRKHGSQ----SCRPSVD 249
VR +W+ GPRKH + S RP +D
Sbjct: 276 VRASKWLAGPRKHNERDDRSSTRPEID 302
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 295 MVPVSMVASLVGPVWTV*TLPSAPV*EYQPFFTRLASSVLGFVK*PSSPTCVP 137
+V S+VA GP T+ LP+ P P T A S PS+PT P
Sbjct: 14 LVASSVVAQAPGPAPTISPLPATPTPSQSPRATAPAPSPSANPP-PSAPTTAP 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,889
Number of Sequences: 28952
Number of extensions: 266746
Number of successful extensions: 709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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