Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00760
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    28   1.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   3.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.6  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   7.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.4  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    25   7.4  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   9.7  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   9.7  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 417 SPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASDPVVDS--AKLLLLG 566
           S SSPNP   T+  T E    ++  S +P   V   +DP ++S  A+L+ +G
Sbjct: 256 SASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPGLNSKIAQLVSMG 307


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 336 KPSTSPKARHHGSS*SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLS 494
           KPS    +R  G S ++  A  +   +S S P  ++ +   T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALEKKNRKSKSKPKVTITS--DTPKVSSQHSPVS 73


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 417 SPSSPNPSLATKGSTSELTHRHSPLSFS-PDLSVGRASD 530
           S + P P L++K S+   T + S  SFS P+  V + SD
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSD 289


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 420 PSSPNPSLATKGST--SELTHRHSPLSFSPDLSVGRASDP 533
           PS P   +     T  ++ T+R     F PD  VGR+S P
Sbjct: 184 PSDPGRFVDDSDLTPHTDFTNRFVDSDFDPDSGVGRSSSP 223


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 355 KHVITDPPDPLTVLLGNTSTGH 420
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 502 GEKLSGLCLWVNSLVEPFVASDGFGEDGD 416
           G  L  +  ++ +L   +V SD FGEDGD
Sbjct: 482 GSTLRNVNDYLAALNPGYVTSDDFGEDGD 510


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 381 SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASDPVVDSAKLL 557
           S+N       + SP  P+PSL T  S   L+    P    PD     A  P+V + K L
Sbjct: 155 SLNHKLHLISYSSPI-PDPSLVTPSSDVNLSRITIPYGLYPD-----AGPPLVQAPKFL 207


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 387 NGAF-RQYKHRSPSSPNPSLATKGSTSEL 470
           NG+F  ++ H S +SP+PS+  K  + EL
Sbjct: 546 NGSFWSKFIHSSSASPSPSIDMKKESLEL 574


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 514 TERSGEKLSGLCLWVNSLVEPFVASDGFGEDGD 416
           T   G  L  +   + +L   +V SD FGEDGD
Sbjct: 478 TLNGGSNLRNINENLAALNPGYVTSDDFGEDGD 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,051
Number of Sequences: 5004
Number of extensions: 53565
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)