Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00760
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 37 0.016
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 32 0.47
02_05_1245 + 35223504-35224778 29 3.3
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 29 3.3
08_01_0918 + 9043949-9045625 29 4.4
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 29 4.4
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 29 4.4
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 28 5.8
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 28 5.8
09_02_0283 + 6819086-6820270 28 7.6
04_01_0527 - 6913266-6913802 28 7.6
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 342 STSPKARHHGSS*SINGAFRQYK-HRSPSSPNPSLATKGSTSELTHRHSPLSFSPD 506
S SP++R+H S S + A R Y+ HR SP SL+ G + HR + S SPD
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQ-DKRHHRSNGRSASPD 222
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 241 GIAAPFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDPP 378
G AAP+ + R ++ VAA I D +DRL N R P ++ PP
Sbjct: 35 GRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPP 80
>02_05_1245 + 35223504-35224778
Length = 424
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +3
Query: 288 CRGRRKLHTRSCRPFGKPSTSPKARHHGSS*SINGAFRQYKHRSPSSPNPSLATKGSTSE 467
C+ + + T S +T+P+ H S QY S SS PS AT S+S
Sbjct: 29 CKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSSSA-PSTATATSSST 87
Query: 468 LTHRHSPLSFSPDL 509
+ PDL
Sbjct: 88 AASLQALRDSLPDL 101
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 390 GAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASD 530
GA ++ R PS+P + G E +P SF PD G +D
Sbjct: 349 GARKERSSRRPSAPRCAQGGGGGQEERRRLWAPTSFPPDADGGGGAD 395
>08_01_0918 + 9043949-9045625
Length = 558
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 383 GSGGSVMTCFGRRRRFTKRSTGSGM*FPAATTRGFSCRAAFSKGAAMPTVDTY 225
G G S++ R R + PAA GF+ A S GA PT+ TY
Sbjct: 55 GGGASIIRSLNRALAAVARDS------PAAAVSGFNRMARSSDGAVTPTLHTY 101
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 372 SS*SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLS 494
SS SI+ A + H S +SP+PS A + ST HR S L+
Sbjct: 64 SSLSISEADKSPSHSSMASPSPSRAVE-STGSPVHRGSQLT 103
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 393 AFRQYKHRSPSSPNPSLATKGSTSE 467
A + K + PS PNPS+ +K S+S+
Sbjct: 319 ATKSQKKKRPSGPNPSIKSKASSSD 343
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 282 PSCRGRRKLHTRSCRPFGKPSTSPKARHHGSS*SINGAFRQYKHRSPSSPNPSLATKGST 461
PS R RR SCRP PS++ A + A +P+SP PS KG
Sbjct: 17 PSSRRRRAFFHHSCRPL--PSSAAAAAKALRA----SAAPAVDEEAPASPPPSDLGKGVE 70
Query: 462 SELTHRHSPLSFSPDLSVGRAS-DPVV 539
+ + P ++ + RA+ PVV
Sbjct: 71 NLVIIGSGPAGYTAAIYAARANLKPVV 97
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 372 SS*SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLS 494
SS SI+ A + H S +SP+PS A + ST HR S L+
Sbjct: 64 SSLSISEADKSPSHSSMASPSPSQALE-STGSPVHRGSQLT 103
>09_02_0283 + 6819086-6820270
Length = 394
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 448 VASDGFGEDGDRCLYCLKAPLMDQEDP**RALGD 347
VA D G D D + LKAP + + DP A+GD
Sbjct: 117 VARDALGMDDDALVVALKAPGVWRVDPVLAAVGD 150
>04_01_0527 - 6913266-6913802
Length = 178
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 291 RGRRKLHTRSCRPFGKPSTSPK 356
R RR+ H R CRP P SP+
Sbjct: 100 RRRRRAHRRQCRPSPPPPLSPE 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,128
Number of Sequences: 37544
Number of extensions: 442194
Number of successful extensions: 1234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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