Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00760
(664 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 33 0.69
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 33 0.69
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 33 0.69
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 33 0.69
AC005028-1|AAS01998.1| 1081|Homo sapiens unknown protein. 33 1.2
Z98256-2|CAI20115.1| 211|Homo sapiens TIMP metallopeptidase inh... 32 2.1
X76227-1|CAA53813.1| 211|Homo sapiens tissue inhibitor of metal... 32 2.1
U67195-1|AAB07547.1| 211|Homo sapiens tissue inhibitor of metal... 32 2.1
U38955-1|AAB17602.1| 170|Homo sapiens tissue inhibitor of metal... 32 2.1
U33114-1|AAC50393.1| 211|Homo sapiens tissue inhibitor of metal... 32 2.1
U14394-1|AAB60373.1| 211|Homo sapiens tissue inhibitor of metal... 32 2.1
U02571-1|AAA17672.1| 211|Homo sapiens tissue inhibitor of metal... 32 2.1
S78453-1|AAB34532.1| 211|Homo sapiens TIMP-3 protein. 32 2.1
L15078-1|AAA21815.1| 197|Homo sapiens metalloproteinase-3 tissu... 32 2.1
CR456593-1|CAG30479.1| 211|Homo sapiens TIMP3 protein. 32 2.1
BT006848-1|AAP35494.1| 211|Homo sapiens tissue inhibitor of met... 32 2.1
BC014277-1|AAH14277.1| 211|Homo sapiens TIMP metallopeptidase i... 32 2.1
AL023282-2|CAI17996.1| 211|Homo sapiens TIMP metallopeptidase i... 32 2.1
Z30183-1|CAA82918.1| 210|Homo sapiens mig-5 protein. 31 2.8
BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C. ele... 30 8.5
BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C. ele... 30 8.5
AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein. 30 8.5
AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death recept... 30 8.5
AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein. 30 8.5
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 37 GNPLQNLHTPRHDVCKRSVRSRGPHQLETPSGYT 138
G+ + + TP + KRSV +R PHQL +PS ++
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 37 GNPLQNLHTPRHDVCKRSVRSRGPHQLETPSGYT 138
G+ + + TP + KRSV +R PHQL +PS ++
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 37 GNPLQNLHTPRHDVCKRSVRSRGPHQLETPSGYT 138
G+ + + TP + KRSV +R PHQL +PS ++
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.69
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 37 GNPLQNLHTPRHDVCKRSVRSRGPHQLETPSGYT 138
G+ + + TP + KRSV +R PHQL +PS ++
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>AC005028-1|AAS01998.1| 1081|Homo sapiens unknown protein.
Length = 1081
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +3
Query: 435 PSLATKGSTSELTHRHSPLSFSPDLSVGRASDPVVDSAKLLLLGRC*QFSGLSPASSPTQ 614
P + G RH +P V RASDPV ++ L L R +FS LS + P
Sbjct: 477 PRRCSDGGAHGYGRRHLQPHDAPGHGVRRASDPVRTGSEGLALPRVPRFSSLSSCNPPAM 536
Query: 615 A 617
A
Sbjct: 537 A 537
>Z98256-2|CAI20115.1| 211|Homo sapiens TIMP metallopeptidase
inhibitor 3 (Sorsby fundus dystrophy,
pseudoinflammatory) protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>X76227-1|CAA53813.1| 211|Homo sapiens tissue inhibitor of
metalloproteinases-3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>U67195-1|AAB07547.1| 211|Homo sapiens tissue inhibitor of
metalloproteinase-3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>U38955-1|AAB17602.1| 170|Homo sapiens tissue inhibitor of
metalloproteinases-3 protein.
Length = 170
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 135 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 168
>U33114-1|AAC50393.1| 211|Homo sapiens tissue inhibitor of
metalloproteinases-3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>U14394-1|AAB60373.1| 211|Homo sapiens tissue inhibitor of
metalloproteinases-3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>U02571-1|AAA17672.1| 211|Homo sapiens tissue inhibitor of
metalloproteinase-3 precursor protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>S78453-1|AAB34532.1| 211|Homo sapiens TIMP-3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>L15078-1|AAA21815.1| 197|Homo sapiens metalloproteinase-3 tissue
inhibitor protein.
Length = 197
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 162 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 195
>CR456593-1|CAG30479.1| 211|Homo sapiens TIMP3 protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>BT006848-1|AAP35494.1| 211|Homo sapiens tissue inhibitor of
metalloproteinase 3 (Sorsby fundus dystrophy,
pseudoinflamm protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>BC014277-1|AAH14277.1| 211|Homo sapiens TIMP metallopeptidase
inhibitor 3 (Sorsby fundus dystrophy,
pseudoinflammatory) protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>AL023282-2|CAI17996.1| 211|Homo sapiens TIMP metallopeptidase
inhibitor 3 (Sorsby fundus dystrophy,
pseudoinflammatory) protein.
Length = 211
Score = 31.9 bits (69), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGYLITEGQFASST 5
G S+HYACIR G Y S+ G+ + ++T
Sbjct: 176 GYQSKHYACIRQKGGYCSWYRGWAPPDKSIINAT 209
>Z30183-1|CAA82918.1| 210|Homo sapiens mig-5 protein.
Length = 210
Score = 31.5 bits (68), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 106 GRVSEHYACIRHDGAYASFVEGY 38
G S+HYACIR G Y S+ G+
Sbjct: 175 GYQSKHYACIRQKGGYCSWYRGW 197
>BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 315 GYVVSGGHDKRVLMSCRLLKGRSDADCRYLL 223
GYV + +VL LL RS++D RYLL
Sbjct: 6 GYVYKAASEGKVLTLAALLLNRSESDIRYLL 36
>BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 315 GYVVSGGHDKRVLMSCRLLKGRSDADCRYLL 223
GYV + +VL LL RS++D RYLL
Sbjct: 6 GYVYKAASEGKVLTLAALLLNRSESDIRYLL 36
>AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein.
Length = 627
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 315 GYVVSGGHDKRVLMSCRLLKGRSDADCRYLL 223
GYV + +VL LL RS++D RYLL
Sbjct: 6 GYVYKAASEGKVLTLAALLLNRSESDIRYLL 36
>AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death receptor
binding protein protein.
Length = 627
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 315 GYVVSGGHDKRVLMSCRLLKGRSDADCRYLL 223
GYV + +VL LL RS++D RYLL
Sbjct: 6 GYVYKAASEGKVLTLAALLLNRSESDIRYLL 36
>AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein.
Length = 627
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 315 GYVVSGGHDKRVLMSCRLLKGRSDADCRYLL 223
GYV + +VL LL RS++D RYLL
Sbjct: 6 GYVYKAASEGKVLTLAALLLNRSESDIRYLL 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,683,980
Number of Sequences: 237096
Number of extensions: 2192439
Number of successful extensions: 8014
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8014
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -