Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00760
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.078
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    29   3.9  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +2

Query: 14  SKLSLRNK---VTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCR 154
           +K S  NK   + LYKT IRP + Y +VV +   +++ K ++ +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 38  VTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCR 154
           + LYKT IRP + Y +VV +   +++ K ++ +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>Z68297-4|CAB54220.1|  356|Caenorhabditis elegans Hypothetical
           protein F11A10.6 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 67  RHDVCKRSVRSRGPHQLETPS-GYTIPILQDSRRSS 171
           R  VCKR VR    H L++ S G  +P L++S + S
Sbjct: 257 RMGVCKRQVRHVDLHSLQSGSVGINLPALENSAKDS 292


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 333 GKPSTSPKARHHGSS*SINGAFRQY 407
           GKP  S   RHH    SIN A RQY
Sbjct: 372 GKPKNSILPRHHPFEISINTAVRQY 396


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 319 PVDRLVNRRRRPKHVITDPPDP 384
           PV      RRR +HV++ PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,629
Number of Sequences: 27780
Number of extensions: 326922
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)