Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00760
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 29 3.6
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 28 6.4
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 27 8.4
At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 27 8.4
At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 27 8.4
At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 27 8.4
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 27 8.4
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 27 8.4
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 481 CLWVNSLVEPFVASDGFGE-DGDRCLYCLKAPLMDQED 371
C W++S PF+ F E D + CL + L ++ED
Sbjct: 41 CFWIDSKNSPFLGQFSFIEKPRDNFICCLSSSLSNEED 78
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 27.9 bits (59), Expect = 6.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 327 PFGKPSTSPKARHHGS-S*SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLSF-S 500
PF KP ++ H S + ++ S + S A + R SP S S
Sbjct: 565 PFKKPEWVQRSSHRPKKSPDRSSDEPEWVETSSARSTKSPARSSDNLKWVQRSSPRSTKS 624
Query: 501 PDLSVGRASDPVVD 542
PD S GRA+D V D
Sbjct: 625 PDRSSGRAADDVKD 638
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 27.5 bits (58), Expect = 8.4
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Frame = +3
Query: 270 TT*EPSCRGRRKLHTRS----CRPFGKPSTSPKARHHGSS*SINGAFRQYKHRSPSSPNP 437
TT RG RK RS RP KPST+ + SS S +G Y+ R
Sbjct: 269 TTRHKGRRGERKSKGRSGKKKARPDRKPSTNSSSDTESSSSSDDG----YRRRLRDGSRS 324
Query: 438 SLATKGSTSELTHRHSPLSFSPDLSVGRASDPVVDSAKLLLLGRC*QFSGLSPASSPT 611
S S+ + P+S +G P+ GR LSP+ SP+
Sbjct: 325 QSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPIRG-------GRTSPAESLSPSHSPS 375
>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 408 KHRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASDP 533
KH+ P S P +T+G+ SE +H+ S D R + P
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLAMRKNAP 97
>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 408 KHRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASDP 533
KH+ P S P +T+G+ SE +H+ S D R + P
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLAMRKNAP 97
>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 408 KHRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLSVGRASDP 533
KH+ P S P +T+G+ SE +H+ S D R + P
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLAMRKNAP 97
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 247 AAPFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDPP 378
A P+ + R ++ VAA I D +DRL N + P ++ PP
Sbjct: 38 ATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPP 81
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 306 LHTRSCRPFGKPSTSPKARHHGSS*SINGAFRQYKHRSPSSPNPSLATKGSTSELTHRHS 485
LH+ S FG + + G + S + R + R +S + S + STS H S
Sbjct: 140 LHSSSPFSFGSAPAAITSVSSGPAQSPASSPRLWIDRFATSSSASATSSSSTSSPFHSSS 199
Query: 486 PLSFSPDL-SVGRASDP 533
L F+P + SV A P
Sbjct: 200 LLGFAPAVTSVSSAPTP 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,900
Number of Sequences: 28952
Number of extensions: 312798
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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