Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00759
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 208 7e-55
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 200 1e-52
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 180 1e-46
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 180 1e-46
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 125 5e-30
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 68 1e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 58 9e-10
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 32 0.064
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.79
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 26 5.6
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 5.6
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 5.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 7.4
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.7
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.7
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 25 9.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 208 bits (507), Expect = 7e-55
Identities = 98/144 (68%), Positives = 114/144 (79%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQN 257
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTE+ + P N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 258 TIFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSXMVLT 437
TIFDAKRLIGRK +D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+S MVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 438 KMKETAEAYLGKTVQNAVITVPAY 509
KM+ETAEAYLG V +AV+TVPAY
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAY 147
Score = 82.6 bits (195), Expect = 5e-17
Identities = 39/46 (84%), Positives = 41/46 (89%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNV 646
FNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NV
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNV 193
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 200 bits (488), Expect = 1e-52
Identities = 94/144 (65%), Positives = 112/144 (77%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQN 257
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTE+ + P N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 258 TIFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSXMVLT 437
TIFDAKRLIGR+ D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+S MVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 438 KMKETAEAYLGKTVQNAVITVPAY 509
KM+E+AEA+LG V +AV+TVPAY
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAY 147
Score = 79.4 bits (187), Expect = 4e-16
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNV 646
FNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NV
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 180 bits (439), Expect = 1e-46
Identities = 83/143 (58%), Positives = 108/143 (75%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQNT 260
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ E+ + P+NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 261 IFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSXMVLTK 440
IFD KRLIGRK ++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 441 MKETAEAYLGKTVQNAVITVPAY 509
MK+TAEAYLGK V +AV+TVPAY
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAY 180
Score = 80.2 bits (189), Expect = 2e-16
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVTY 652
FND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T + V Y
Sbjct: 181 FNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDTEKHIVVY 228
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 180 bits (439), Expect = 1e-46
Identities = 86/144 (59%), Positives = 105/144 (72%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQN 257
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TE+ + P+N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 258 TIFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSXMVLT 437
T+FDAKRLIGR+ ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 438 KMKETAEAYLGKTVQNAVITVPAY 509
KMKE +EA L K V+ AVITVPAY
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAY 151
Score = 74.9 bits (176), Expect = 9e-15
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNV 646
F+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NV
Sbjct: 152 FSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNV 197
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 125 bits (302), Expect = 5e-30
Identities = 64/148 (43%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTEQSHRRCRQEPGGD 245
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D E+ +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 246 EPQNTIFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSX 425
P+NT F KRLIGR+ ++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQIGG 165
Query: 426 MVLTKMKETAEAYLGKTVQNAVITVPAY 509
+L+KM+ETA YLGK V+NAV+TVPAY
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAY 193
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 625
FNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK
Sbjct: 194 FNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK 232
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 68.1 bits (159), Expect = 1e-12
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGD 245
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + + +
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 246 EPQNTIFDAKRLIGRKSEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 422
+NT+ KRL GR +D ++ + ++ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122
Query: 423 XMVLTKMKETAEAYLGKTVQNAVITVPAY 509
TK+K AEA L +V + VI++PA+
Sbjct: 123 AAYFTKIKAIAEAELIGSVSDVVISIPAW 151
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 509 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 622
F D QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 152 FTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 58.4 bits (135), Expect = 9e-10
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQNT 260
+GI G S + + GK +++AN++GNR PS +++ ++ H + N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 261 IFDAKRLIGRKSEDATVQADMKHWPFEVVSDGGKPKIKVAYKGE------DKTFFPEEVS 422
+ + + L+G+ ++ T+ H+ V+ G+ K+ + + +K E S
Sbjct: 87 VTNFRDLLGKSHDELTLH--HCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEAS 144
Query: 423 XMVLTKMKETAEAYLGKTVQNAVITVPAY 509
L ++ E+AE +LG V V++VP Y
Sbjct: 145 VRHLRRLTESAEDFLGTKVNGCVMSVPVY 173
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 32.3 bits (70), Expect = 0.064
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTEQSHRRCRQEPGGDEPQN 257
+ ID GT ++ + + G +EI+ R S VAF E+ P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 258 TIFDAKRLIGRKS-EDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSXMV 431
+I + K L+ E VQ +P + + + +++ +++ + EE+ M
Sbjct: 85 SIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMT 144
Query: 432 LTKMKETAEAYLGKTVQNAVITVPAY 509
+ AE + + + V+TVP +
Sbjct: 145 MEHYISLAEEMAHEKITDLVLTVPPH 170
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.26
Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Frame = -1
Query: 658 SKISDISFSSTLF-VKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEYAGTVITAF 482
S IS S ST V ++ + S+S S ++ + + F S + I++
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSS 621
Query: 481 CTVLPR*ASAVSFIFVSTMXLTSSGKKVLSSPL-----------YATLILGLPPSLTTSK 335
T+L + S + +S+ + S +LSS + Y++ ++ +L +S
Sbjct: 622 STILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSS 681
Query: 334 GQCFMSACTVASSDLRPMRRLASNIVFWGSS 242
+S+ VASS P+ +S + + +S
Sbjct: 682 SSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 269 IEYCVLGFIATW--FLAASPMRLLGVCERNIRRSGPVALVVGDDLHLPVLEDTNARVRGT 96
I VL +TW F +PM + N + +VG LH+ + +G+
Sbjct: 6 ITVAVLFVQSTWASFAFGNPMSMRNKAHTNDLVNSKGKPLVGRFLHITDMHPDIYYEKGS 65
Query: 95 QIDSYCGCFCH 63
+D YC + H
Sbjct: 66 TVDHYCHSYDH 76
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 658 SKISDISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIF 536
S++ DIS SST+ +K + N S + + +V GT ++
Sbjct: 357 SEVYDISASSTVTLKDILNHYSKSYNLQNPSVSTAAGTPLY 397
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.6
Identities = 29/137 (21%), Positives = 58/137 (42%)
Frame = -1
Query: 649 SDISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEYAGTVITAFCTVL 470
S +S+ V T + +SS ++ S + + ++ + + T IT+ T+
Sbjct: 3248 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLN 3307
Query: 469 PR*ASAVSFIFVSTMXLTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSDL 290
S + S+ +TSS S+P+ ++ +L ++T+S S +SS L
Sbjct: 3308 TSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS-SILNSSTPVTSSSVL 3366
Query: 289 RPMRRLASNIVFWGSSP 239
+ S+ V S+P
Sbjct: 3367 NSSTPITSSTVVNSSTP 3383
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 7.4
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 SSSTGRWRSSPTTRATGPLRLMLRS--QTPSSLIGDAAKNQVAMNPKTQYSMPNVSSDVS 294
S+ G+ +SP+ +R L S QTP+S+ A+ + V++ + S P VSS
Sbjct: 44 STPNGKEAASPSALKQN-VRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKPVVSS--K 100
Query: 295 PKMLLCKPT*STGLSR 342
P P S SR
Sbjct: 101 PNQTTAMPPPSNNPSR 116
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 389 TLICYLDLRFASITDNLERPVLHVGLHSSIFGLTSDETFGI 267
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = -3
Query: 242 ATWFLAASPMRLLGVCER----NIRRSGPVALVVGDDLHLPVLEDTNARVRGTQIDSYCG 75
+ W LA SP+R+LG+ N+ P +D H P + G + + C
Sbjct: 48 SAWGLAVSPLRILGISSNSHNVNLFHLSPEFKRFKEDYHSPWFRQETLVLEGHEHNIPCI 107
Query: 74 CF 69
F
Sbjct: 108 TF 109
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 59 QNGKSTRSRNRSGYHVLLRWCLPARE 136
+NGK T +R +S + W P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 392 RQNLFPRGSQXHGAYENEGNCRS-LSWQNCAECSNH--GSRVFNDSQRQATKDAGT 550
R+NLF + + +G E+E +CRS + ++N + ++ S Q KD T
Sbjct: 51 RENLFFKEMRTNGKNEHETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKT 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,365
Number of Sequences: 5004
Number of extensions: 63716
Number of successful extensions: 198
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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