Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00758
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 522  KPMEDTIYADEDQDLSTLE 578
            +P+ + IY+  D D STLE
Sbjct: 1328 RPLSEHIYSSIDSDYSTLE 1346


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 395 ITRTSNANSSPMIVAVTVTTQA 330
           ++RTS A   P  VA TVT+ +
Sbjct: 720 VSRTSTAGQFPTNVATTVTSMS 741


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 629 LQGIVVRFILVFFLIGSF*GAQILVFVSVYSILHRFEVVEGLLLYFWLSNF 477
           + G++V F + F L+    GAQ  + V  + IL+   +    ++  W S F
Sbjct: 240 VMGMIV-FCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGIIIMWYSPF 289


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 633 LHDITVLEEDNIGDDEDMLD 692
           ++++  +EE+NI  D +++D
Sbjct: 30  IYELRQIEEENIEPDTELMD 49


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 185 HALIPDPITMYTQKETMK 238
           HAL+ DP+  + ++ T++
Sbjct: 177 HALLKDPVKEFWERRTLQ 194


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 185 HALIPDPITMYTQKETMK 238
           HAL+ DP+  + ++ T++
Sbjct: 230 HALLKDPVKEFWERRTLQ 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,668
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)