Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00757
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.45 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.8  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   1.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.7  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 516 IRNEPINKPQPARIQPLSNRPQRP 587
           + N P  KP+P ++     RP RP
Sbjct: 247 LENPPTPKPRPTKVSRRKPRPPRP 270


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 319 NTPTAFSSSGYS-TPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPVKLDP 468
           +T  A    G+  TP P     D TT+ +P P I   P P    SP+  +P
Sbjct: 57  STSAAADVDGWQVTPLPS----DGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 71  QNDSPIPP--RLQIPGAIPVGGPVRQGGFRQGRIAPVPGSI 187
           QN++P+P   R+ +P  +  G P   GG +     P PGS+
Sbjct: 108 QNNNPLPSPRRVAVPVLVRDGKPCLSGGPKH----PDPGSL 144


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 253 NLQSLDEPAKPVTEEPEDEYEINTPTAFSSSG-YSTPEPQNDFYDITTTSQPKPPIIFNP 429
           N  S+ EP    T  PE     +TP+A  S    +TP+P     + +T++  +   +   
Sbjct: 395 NSYSVPEPTISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVST- 453

Query: 430 FPQSSPSPVKLDP 468
             ++ P+P   +P
Sbjct: 454 -TEAPPAPAVSNP 465


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 43  YAVCFNSLCTK*LSYSTETTNTRSHSC 123
           Y  C+N   T+ L       N R+HSC
Sbjct: 115 YWTCWNGTATEQLCIGGLLYNERTHSC 141


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 280 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKP 411
           +P  +EP D+YE +    +  S  +   P   F D+   +   P
Sbjct: 89  RPPPDEPIDDYEPSFDLFYYPSRQTLYTPVQYFKDLVAEAYVSP 132


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 383 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 490
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 383 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 490
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 383 TSPPLLSQNHP*SLTRSHNLLLALSS*IPSVPRNTD 490
           T P   S N    +T S N+L  L+   P+V  N D
Sbjct: 109 TQPMCESLNTQPPVTSSSNILQNLADITPNVTPNCD 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,300
Number of Sequences: 336
Number of extensions: 3934
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)