Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00757
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    29   0.64 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.64 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   0.85 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   1.1  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   2.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   2.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   4.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   6.0  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   6.0  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +1

Query: 241 LTSSNLQSLDEPAKPVTEEP--EDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQ-PKP 411
           L +SNL S + PA+PV   P  +    +N PTA   S    P  Q +    T  S+ P  
Sbjct: 334 LPTSNLPSQNAPARPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTNIPANTNRSERPFT 393

Query: 412 PII-FNPFPQSSPSPVKLDPI-RPT 480
            ++ F+  P  +  P  L+ + RP+
Sbjct: 394 QLMTFHGLPSLADLPAVLESMFRPS 418


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 26/121 (21%), Positives = 48/121 (39%)
 Frame = +1

Query: 82  SYSTETTNTRSHSCRRTSQARRLQARKDSTGAWFNS*SKKTRICQTVF*IRGCLTSSNLQ 261
           S ST TT + S S   +S +    +   S+ +  +S S  +    +        +SS+  
Sbjct: 146 SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SSSSSSSSSS 201

Query: 262 SLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQS 441
           S    + P+T      +  ++ ++ SSS  S P   + F    ++S     +   P   S
Sbjct: 202 SSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSS 261

Query: 442 S 444
           S
Sbjct: 262 S 262


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 280 KPVTEEPEDEYEINTP-TAFSSSGYSTPEPQNDFYDITTTSQ 402
           +P    P    E+N P T+  +  YS PEP  DF+   T  Q
Sbjct: 290 QPTGTSPSPPVEMNFPDTSDITPAYSEPEPIQDFWSDPTLDQ 331


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 271  EPAKPVTEEPEDEYEIN--TPTAFSSSGYSTPEPQNDFYDI-TTTSQPKPP 414
            EP+ P +  P   +     TP+AF++S   +P P    +++ ++ SQ   P
Sbjct: 1095 EPSNPASNPPSTGFSFGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAP 1145


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 614 KRLSFRPEYRSLRSIGKWLNSGRLRFVNWFVSDRVEGVGEDGLYCVGRMGS 462
           K LSF P  RSL + G   +   +RF N F   ++     D LYC  ++ S
Sbjct: 368 KALSFCPWQRSLLATGAGSHDKHIRFYNCFNGKKI-----DELYCGAQITS 413


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 FRPAATLHPNLKMTSTTSPPLLSQNHP*SLTRS 433
           F P AT  PN   TST +PP  +  +P +L  S
Sbjct: 222 FSPFATSSPNFLSTSTPAPPNSNNANPSTLFSS 254


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 241 LTSSNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYD 384
           L  ++   L EP    +   ED+ +IN P +  SS  S+P+  +  Y+
Sbjct: 57  LLGNSDSDLLEPPSEHSSNGEDDKDINNPPSMPSSVCSSPKSPHRHYE 104


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
 Frame = +1

Query: 244 TSSNLQSLDEPAKPVTEE-PEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPII 420
           + +NLQ     A P     P    + N P   S S   +P P       T  SQP P   
Sbjct: 258 SQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFS 317

Query: 421 FNPFPQSSPSPVKLDP 468
            +  P +S     L P
Sbjct: 318 SSFVPGTSSIVPTLHP 333


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 340 SSGYSTPEPQNDFYDITTTSQPKPPII-FNPFPQSSPSPVKLDPIR 474
           S   S+   +ND   ++ T+   P I   +P P +SP P+ ++P++
Sbjct: 563 SKSSSSKHKENDKASVSITTTTTPSITPADPVP-TSPKPLAIEPVK 607


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 331 AFSSSGYSTPEPQNDFYDITT----TSQPKPPIIFNPFPQSSP 447
           AF SS +S P  + D    +T    T+  KP  IFN  P S+P
Sbjct: 231 AFLSSYFSPPNAEFDSTFCSTLSSLTNSEKPTYIFNFKPNSTP 273


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 471 PSHAIQTVFTHTFNPIRNEPINKPQPARIQPLSNRP 578
           P HA+Q +        R  P+   +P  + PL+N P
Sbjct: 14  PKHALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTP 49


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 295 EPEDE---YEINTPTAFSSSGYSTPEPQNDFYDITTTSQPK 408
           EP+D    +++N     S+ GYST EP+++F     T+ P+
Sbjct: 206 EPKDSQFNHDVNLMQG-SAPGYSTVEPEDNFASEIQTNAPE 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,857
Number of Sequences: 5004
Number of extensions: 64331
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)